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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for AT24650 through 18771 annotations produced 1 hits



putative noncoding RNA 010:3L (BG642312):

Annotation Number : AT24650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0047334
Gbrowse : chr3L:6225564-6226481 (-) // 100.0 //
Probeset : 1625996_s_at
Accessions : protein= NP_001036587;, nucleotide= NM_001043122;
FlyMine data for FBgn0047334.
VDRC has 1 RNAi stocks for FBgn0047334 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye4 ± 10 of 4 0.00Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.00Down
Crop1 ± 00 of 4 0.00Down
Midgut69 ± 34 of 4 0.00Down
Tubule164 ± 224 of 4 0.10Down
Hindgut24 ± 14 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body3 ± 21 of 4 0.00Down
Ovary12 ± 92 of 4 0.00Down
Testis114 ± 484 of 4 0.10Down
Male accessory glands10072 ± 2904 of 4 6.60Up
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca0 ± 00 of 4 0.00Down
Adult carcass146 ± 754 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut30 ± 64 of 4 0.02Down
Larval tubule29 ± 34 of 4 0.00Down
Larval hindgut12 ± 14 of 4 0.01Down
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea3 ± 31 of 4 0.00Down
Larval carcass2 ± 01 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly1529 ± 944 of 4

Looking for AT24650. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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