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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10001-RA through 18771 annotations produced 1 hits



Allatostatin Receptor 2 (AR-2):

Annotation Number : CG10001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039595
Gbrowse : chr3R:24562830-24569855 (-) // 100.0 //
Probeset : 1634874_at
Accessions : protein= NP_524544;, nucleotide= NM_079820;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0039595.
Homophila reports that CG10001 is a close match (8e-11) to human gene ADRA2C;ADRA2L2 (NP_000674), a gene associated with {Congestive heart failure, susceptibility to} (3).
TRiP has 1 RNAi stocks for FBgn0039595 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039595 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 12 of 4 0.70Down
Head13 14 of 4 1.00None
Eye40 34 of 4 3.01Up
Thoracicoabdominal ganglion20 13 of 4 1.50Up
Salivary gland4 10 of 4 0.33Down
Crop116 34 of 4 8.70Up
Midgut157 84 of 411.80Up
Tubule54 54 of 4 4.10Up
Hindgut262 74 of 419.70Up
Heart44 44 of 4 3.36Up
Fat body2 20 of 4 0.18Down
Ovary2 00 of 4 0.20Down
Testis10 13 of 4 0.70None
Male accessory glands35 42 of 4 2.70Up
Virgin spermatheca11 01 of 4 0.83None
Mated spermatheca13 13 of 4 1.00None
Adult carcass12 40 of 4 1.00None
Larval CNS28 34 of 4 2.16Up
Larval Salivary gland1 00 of 4 0.14Down
Larval midgut103 84 of 4 7.74Up
Larval tubule47 24 of 4 3.60Up
Larval hindgut196 124 of 414.70Up
Larval fat body6 00 of 4 0.50Down
Larval trachea11 72 of 4 0.84None
Larval carcass128 134 of 4 9.64Up
S2 cells (growing)1 00 of 4 0.10Down
Whole fly13 04 of 4

Looking for CG10001-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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