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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10013-RA through 18771 annotations produced 1 hits



/// CG10013 (CG10013 /// DvirGJ23308):

Annotation Number : CG10013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038012
Gbrowse : chr3R:8149244-8150932 (+) // 99.76 //
Probeset : 1623173_at
Accessions : protein= NP_650175;, nucleotide= NM_141918;
FlyMine data for FBgn0038012.
BDGP gene expression has embryonic in situ data for CG10013: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038012 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 12 of 4 0.30Down
Head6 ± 01 of 4 0.40Down
Eye5 ± 00 of 4 0.37Down
Thoracicoabdominal ganglion7 ± 23 of 4 0.50None
Salivary gland15 ± 23 of 4 1.11None
Crop7 ± 23 of 4 0.50Down
Midgut8 ± 31 of 4 0.60None
Tubule7 ± 02 of 4 0.60Down
Hindgut6 ± 02 of 4 0.50Down
Heart4 ± 02 of 4 0.34Down
Fat body8 ± 13 of 4 0.62Down
Ovary6 ± 02 of 4 0.40Down
Testis148 ± 24 of 410.50Up
Male accessory glands7 ± 01 of 4 0.50Down
Virgin spermatheca7 ± 03 of 4 0.54Down
Mated spermatheca9 ± 14 of 4 0.68Down
Adult carcass9 ± 01 of 4 0.60Down
Larval CNS4 ± 24 of 4 0.34Down
Larval Salivary gland8 ± 11 of 4 0.59Down
Larval midgut8 ± 02 of 4 0.58Down
Larval tubule6 ± 01 of 4 0.50Down
Larval hindgut4 ± 13 of 4 0.31Down
Larval fat body43 ± 144 of 4 3.10None
Larval trachea7 ± 23 of 4 0.50Down
Larval carcass9 ± 04 of 4 0.65Down
S2 cells (growing)6 ± 03 of 4 0.43Down
Whole fly14 ± 04 of 4

Looking for CG10013-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime