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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10019-RA through 18771 annotations produced 1 hits



(CG10019):

Annotation Number : CG10019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031568
Gbrowse : chr2L:3745691-3752190 (+) // 100.0 //
Probeset : 1627797_at
Accessions : protein= NP_608805;, nucleotide= NM_134961;
Interpro : 0008028 // monocarboxylic acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0031568.
BDGP gene expression has embryonic in situ data for CG10019: 4 pix of staining in 1 body parts.
Homophila reports that CG10019 is a close match (1e-15) to human gene DXS128;SLC16A2;XPCT (NP_006508), a gene associated with Allan-Herndon-Dudley syndrome, 300523 (3).
BioGrid reports that CG10019 interacts with CG3953 .
VDRC has 2 RNAi stocks for FBgn0031568 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 21 of 4 1.00None
Head7 ± 11 of 4 0.80None
Eye2 ± 00 of 4 0.25Down
Thoracicoabdominal ganglion12 ± 31 of 4 1.30None
Salivary gland19 ± 40 of 4 2.02None
Crop13 ± 12 of 4 1.40None
Midgut6 ± 10 of 4 0.60None
Tubule4 ± 00 of 4 0.50Down
Hindgut12 ± 30 of 4 1.30None
Heart6 ± 10 of 4 0.68None
Fat body11 ± 23 of 4 1.21None
Ovary7 ± 03 of 4 0.70None
Testis8 ± 14 of 4 0.90None
Male accessory glands13 ± 12 of 4 1.40None
Virgin spermatheca3 ± 10 of 4 0.39Down
Mated spermatheca7 ± 20 of 4 0.74None
Adult carcass10 ± 40 of 4 1.10None
Larval CNS10 ± 22 of 4 1.12None
Larval Salivary gland10 ± 10 of 4 1.14None
Larval midgut14 ± 10 of 4 1.47None
Larval tubule6 ± 20 of 4 0.70None
Larval hindgut12 ± 02 of 4 1.25None
Larval fat body8 ± 20 of 4 0.90None
Larval trachea6 ± 11 of 4 0.67None
Larval carcass12 ± 13 of 4 1.34None
S2 cells (growing)8 ± 13 of 4 0.89None
Whole fly9 ± 13 of 4

Looking for CG10019-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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