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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10034-RA through 18771 annotations produced 1 hits



female sterile(2)eo2 (tj):

Annotation Number : CG10034
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000964
Gbrowse : chr2L:19464761-19466291 (+) // 100.0 //
Probeset : 1631744_at
Accessions : protein= NP_609969;, nucleotide= NM_136125;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // in
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0000964.
Homophila reports that CG10034 is a close match (3e-12) to human gene D14S46E;NRL;RP27 (NP_006168), a gene associated with Retinal degeneration, autosomal recessive, clumped pigment type (3);Retinitis pigmentosa-27 (3).
TRiP has 2 RNAi stocks for FBgn0000964 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000964 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 0.60None
Head5 ± 20 of 4 0.40None
Eye4 ± 20 of 4 0.36None
Thoracicoabdominal ganglion3 ± 10 of 4 0.30Down
Salivary gland9 ± 30 of 4 0.73None
Crop2 ± 10 of 4 0.20Down
Midgut4 ± 20 of 4 0.40None
Tubule2 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart2 ± 00 of 4 0.20Down
Fat body24 ± 110 of 4 1.93None
Ovary20 ± 13 of 4 1.60None
Testis1 ± 00 of 4 0.10Down
Male accessory glands7 ± 30 of 4 0.60None
Virgin spermatheca3 ± 10 of 4 0.31Down
Mated spermatheca4 ± 20 of 4 0.35None
Adult carcass7 ± 00 of 4 0.60None
Larval CNS3 ± 10 of 4 0.28Down
Larval Salivary gland1 ± 00 of 4 0.12Down
Larval midgut1 ± 00 of 4 0.11Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.10Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea1 ± 00 of 4 0.10Down
Larval carcass1 ± 00 of 4 0.09Down
S2 cells (growing)1 ± 00 of 4 0.15Down
Whole fly12 ± 20 of 4

Looking for CG10034-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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