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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10038-RB through 18771 annotations produced 1 hits



/// Pftaire (CG10038 /// Eip63E):

Annotation Number : CG10038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038013
Gbrowse : chr3R:8174705-8176367 (-) // 100.0 //
Probeset : 1625002_a_at
Accessions : protein= NP_001036581; /// NP_001036582; /// NP_001036583; /// NP_001036584; /// NP_001036585; /// NP_001036586; /// NP_001163340; /// NP_523904; /// NP_650176; /// NP_728888; /// NP_728889; /// NP_728890; /// NP_728891; /// NP_731685;, nucleotide= NM_001043116; /// NM_001043117; /// NM_001043118; /// NM_001043119; /// NM_001043120; /// NM_001043121; /// NM_001169869; /// NM_079180; /// NM_141919; /// NM_168033; /// NM_168034; /// NM_168035; /// NM_168036; /// NM_169460;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0038013.
VDRC has 1 RNAi stocks for FBgn0038013 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 44 of 4 0.60Down
Head141 124 of 4 0.70Down
Eye152 74 of 4 0.74Down
Thoracicoabdominal ganglion135 44 of 4 0.70Down
Salivary gland250 134 of 4 1.21Up
Crop215 74 of 4 1.00None
Midgut146 24 of 4 0.70Down
Tubule147 24 of 4 0.70Down
Hindgut149 24 of 4 0.70Down
Heart197 84 of 4 0.96None
Fat body194 274 of 4 0.95None
Ovary326 54 of 4 1.60Up
Testis174 44 of 4 0.80Down
Male accessory glands270 104 of 4 1.30Up
Virgin spermatheca468 154 of 4 2.28Up
Mated spermatheca475 344 of 4 2.31Up
Adult carcass143 124 of 4 0.70Down
Larval CNS378 184 of 4 1.84Up
Larval Salivary gland219 64 of 4 1.07None
Larval midgut96 54 of 4 0.47Down
Larval tubule234 44 of 4 1.10Up
Larval hindgut146 94 of 4 0.71Down
Larval fat body252 164 of 4 1.20None
Larval trachea287 114 of 4 1.39Up
Larval carcass177 104 of 4 0.86None
S2 cells (growing)226 114 of 4 1.10None
Whole fly205 64 of 4

Looking for CG10038-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime