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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10042-RB through 18771 annotations produced 1 hits



MBD-R2 (MBD-R2):

Annotation Number : CG10042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038016
Gbrowse : chr3R:8177864-8181982 (-) // 100.0 //
Probeset : 1638609_s_at
Accessions : protein= NP_650178; /// NP_731688;, nucleotide= NM_141921; /// NM_169461;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0038016.
BioGrid reports that CG10042 interacts with CG9288 .
TRiP has 2 RNAi stocks for FBgn0038016 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038016 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 ± 54 of 4 1.20None
Head113 ± 24 of 4 0.80None
Eye127 ± 84 of 4 0.90None
Thoracicoabdominal ganglion131 ± 34 of 4 0.90None
Salivary gland154 ± 24 of 4 1.09None
Crop119 ± 44 of 4 0.80None
Midgut88 ± 34 of 4 0.60Down
Tubule76 ± 44 of 4 0.50Down
Hindgut113 ± 54 of 4 0.80None
Heart92 ± 24 of 4 0.65Down
Fat body96 ± 74 of 4 0.68Down
Ovary219 ± 24 of 4 1.50Up
Testis199 ± 104 of 4 1.40Up
Male accessory glands186 ± 74 of 4 1.30Up
Virgin spermatheca64 ± 34 of 4 0.46Down
Mated spermatheca72 ± 74 of 4 0.51Down
Adult carcass95 ± 14 of 4 0.70Down
Larval CNS229 ± 74 of 4 1.62Up
Larval Salivary gland163 ± 54 of 4 1.15None
Larval midgut82 ± 34 of 4 0.58Down
Larval tubule89 ± 14 of 4 0.60Down
Larval hindgut104 ± 14 of 4 0.74None
Larval fat body64 ± 64 of 4 0.50Down
Larval trachea148 ± 24 of 4 1.05None
Larval carcass95 ± 64 of 4 0.67Down
S2 cells (growing)241 ± 84 of 4 1.70Up
Whole fly141 ± 134 of 4

Looking for CG10042-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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