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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10059-RA through 18771 annotations produced 1 hits



MAGE (MAGE):

Annotation Number : CG10059
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037481
Gbrowse : chr3R:2979959-2980898 (-) // 100.0 //
Probeset : 1626266_at
Accessions : protein= NP_649702;, nucleotide= NM_141445;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037481.
BDGP gene expression has embryonic in situ data for MAGE: 13 pix of staining in 6 body parts.
BioGrid reports that CG10059 interacts with CG13142 CG15136 CG9520 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 44 of 4 0.40Down
Head72 ± 24 of 4 0.50Down
Eye141 ± 54 of 4 1.07None
Thoracicoabdominal ganglion49 ± 24 of 4 0.40Down
Salivary gland123 ± 84 of 4 0.93None
Crop75 ± 44 of 4 0.60Down
Midgut48 ± 34 of 4 0.40Down
Tubule44 ± 24 of 4 0.30Down
Hindgut79 ± 24 of 4 0.60Down
Heart94 ± 24 of 4 0.71Down
Fat body87 ± 104 of 4 0.66Down
Ovary260 ± 34 of 4 2.00Up
Testis73 ± 34 of 4 0.60Down
Male accessory glands97 ± 34 of 4 0.70Down
Virgin spermatheca75 ± 64 of 4 0.57Down
Mated spermatheca77 ± 54 of 4 0.59Down
Adult carcass68 ± 24 of 4 0.50Down
Larval CNS142 ± 84 of 4 1.08None
Larval Salivary gland59 ± 24 of 4 0.45Down
Larval midgut30 ± 34 of 4 0.23Down
Larval tubule71 ± 14 of 4 0.50Down
Larval hindgut46 ± 24 of 4 0.35Down
Larval fat body77 ± 54 of 4 0.60Down
Larval trachea79 ± 64 of 4 0.60Down
Larval carcass47 ± 14 of 4 0.36Down
S2 cells (growing)116 ± 34 of 4 0.88None
Whole fly132 ± 84 of 4

Looking for CG10059-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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