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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10066-RA through 18771 annotations produced 1 hits



48 related 1 (Fer1):

Annotation Number : CG10066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037475
Gbrowse : chr3R:2961927-2963754 (+) // 100.0 //
Probeset : 1626358_at
Accessions : protein= NP_996177;, nucleotide= NM_206455;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0037475.
BDGP gene expression has embryonic in situ data for Fer1: 64 pix of staining in 10 body parts.
TRiP has 1 RNAi stocks for FBgn0037475 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037475 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 34 of 440.80Up
Head35 54 of 411.10Up
Eye0 00 of 4 0.24None
Thoracicoabdominal ganglion8 10 of 4 2.70Up
Salivary gland2 00 of 4 0.80None
Crop1 00 of 4 0.30None
Midgut6 30 of 4 1.90None
Tubule1 00 of 4 0.50Down
Hindgut0 00 of 4 0.20None
Heart1 10 of 4 0.54None
Fat body0 00 of 4 0.27None
Ovary1 00 of 4 0.30None
Testis1 00 of 4 0.40None
Male accessory glands36 14 of 411.30Up
Virgin spermatheca2 10 of 4 0.78None
Mated spermatheca1 00 of 4 0.54None
Adult carcass1 00 of 4 0.40None
Larval CNS48 34 of 415.16Up
Larval Salivary gland0 00 of 4 0.23None
Larval midgut1 00 of 4 0.40None
Larval tubule0 00 of 4 0.20None
Larval hindgut1 00 of 4 0.46None
Larval fat body1 00 of 4 0.60None
Larval trachea1 00 of 4 0.39None
Larval carcass2 10 of 4 0.72None
S2 cells (growing)1 00 of 4 0.45None
Whole fly3 10 of 4

Looking for CG10066-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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