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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10067-RA through 18771 annotations produced 1 hits



Actin 57B (Act57B):

Annotation Number : CG10067
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000044
Gbrowse : chr2R:16831532-16833945 (+) // 100.0 //
Probeset : 1634250_at
Accessions : protein= NP_001163219; /// NP_523800;, nucleotide= NM_001169748; /// NM_079076;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskele
FlyMine data for FBgn0000044.
BDGP gene expression has embryonic in situ data for Act57B: 13 pix of staining in 3 body parts.
Homophila reports that CG10067 is a close match (0) to human gene ACTC1;CMD1R;CMH11 (NP_005150), a gene associated with Cardiomyopathy, dilated, 1R (3);Cardiomyopathy, familial hypertrophic, 11, 612098 (3).
BioGrid reports that CG10067 interacts with CG11489 CG17358 CG3075 CG31764 CG33141 CG5023 CG5289 CG7221 CG7285 .
TRiP has 1 RNAi stocks for FBgn0000044 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000044 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 164 of 4 0.10Down
Head2924 1184 of 4 1.20Up
Eye680 1264 of 4 0.28Down
Thoracicoabdominal ganglion165 194 of 4 0.10Down
Salivary gland166 274 of 4 0.07Down
Crop7045 5004 of 4 2.90Up
Midgut2708 1044 of 4 1.10None
Tubule564 584 of 4 0.20Down
Hindgut5215 864 of 4 2.20Up
Heart5059 2984 of 4 2.10Up
Fat body1135 3114 of 4 0.47Down
Ovary430 614 of 4 0.20Down
Testis874 234 of 4 0.40Down
Male accessory glands5374 2394 of 4 2.20Up
Virgin spermatheca565 1504 of 4 0.23Down
Mated spermatheca1623 2334 of 4 0.67Down
Adult carcass4361 1604 of 4 1.80Up
Larval CNS224 564 of 4 0.09Down
Larval Salivary gland403 364 of 4 0.17Down
Larval midgut4493 1154 of 4 1.86Up
Larval tubule504 354 of 4 0.20Down
Larval hindgut4894 1094 of 4 2.03Up
Larval fat body95 324 of 4 0.00Down
Larval trachea2788 10844 of 4 1.16None
Larval carcass5186 4424 of 4 2.15Up
S2 cells (growing)7 04 of 4 0.00Down
Whole fly2411 1244 of 4

Looking for CG10067-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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