FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10076-RD through 18771 annotations produced 2 hits

spire (spir):

Annotation Number : CG10076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003475
Gbrowse : chr2L:20311236-20344970 (+) // 100.0 //
Probeset : 1637962_at
Accessions : protein= NP_001163020; /// NP_524854; /// NP_724254; /// NP_724255; /// NP_724256;, nucleotide= NM_001169549; /// NM_080115; /// NM_165323; /// NM_165324; /// NM_165325;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0003779 // actin binding // non-traceable author statement /// 0003779 // actin binding // traceable author statement //
FlyMine data for FBgn0003475.
BDGP gene expression has embryonic in situ data for spir: 38 pix of staining in 20 body parts.
BioGrid reports that CG10076 interacts with CG14579 CG1891 CG5680 CG15119 CG30409 CG31092 CG8280 CG9603 CG9924 CG11924 CG5637 .
TRiP has 1 RNAi stocks for FBgn0003475 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003475 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	347 ± 6	4 of 4	6.00	Up
Head	159 ± 8	4 of 4	2.80	Up
Eye	210 ± 16	4 of 4	3.64	Up
Thoracicoabdominal ganglion	524 ± 25	4 of 4	9.10	Up
Salivary gland	30 ± 9	3 of 4	0.54	None
Crop	20 ± 2	4 of 4	0.40	Down
Midgut	142 ± 3	4 of 4	2.50	Up
Tubule	52 ± 9	4 of 4	0.90	None
Hindgut	121 ± 9	4 of 4	2.10	Up
Heart	78 ± 11	4 of 4	1.35	None
Fat body	94 ± 5	4 of 4	1.64	Up
Ovary	32 ± 1	4 of 4	0.60	Down
Testis	55 ± 1	4 of 4	1.00	None
Male accessory glands	12 ± 1	3 of 4	0.20	Down
Virgin spermatheca	80 ± 8	4 of 4	1.40	None
Mated spermatheca	80 ± 7	4 of 4	1.40	None
Adult carcass	78 ± 4	4 of 4	1.40	Up
Larval CNS	58 ± 4	4 of 4	1.02	None
Larval Salivary gland	12 ± 1	4 of 4	0.21	Down
Larval midgut	177 ± 6	4 of 4	3.08	Up
Larval tubule	101 ± 10	4 of 4	1.80	Up
Larval hindgut	88 ± 8	4 of 4	1.53	Up
Larval fat body	47 ± 5	4 of 4	0.80	None
Larval trachea	46 ± 13	4 of 4	0.81	None
Larval carcass	20 ± 3	4 of 4	0.36	Down
S2 cells (growing)	168 ± 11	4 of 4	2.92	Up
Whole fly	57 ± 2	4 of 4

spire (spir):

Annotation Number : CG10076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003475
Gbrowse : chr2L:20311236-20344970 (+) // 100.0 //
Probeset : 1631571_a_at
Accessions : protein= NP_001163020; /// NP_524854; /// NP_724254; /// NP_724255; /// NP_724256;, nucleotide= NM_001169549; /// NM_080115; /// NM_165323; /// NM_165324; /// NM_165325;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0003779 // actin binding // non-traceable author statement /// 0003779 // actin binding // traceable author statement //
FlyMine data for FBgn0003475.
BDGP gene expression has embryonic in situ data for spir: 38 pix of staining in 20 body parts.
BioGrid reports that CG10076 interacts with CG14579 CG1891 CG5680 CG15119 CG30409 CG31092 CG8280 CG9603 CG9924 CG11924 CG5637 .
TRiP has 1 RNAi stocks for FBgn0003475 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003475 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	220 ± 5	4 of 4	6.20	Up
Head	107 ± 3	4 of 4	3.00	Up
Eye	153 ± 5	4 of 4	4.34	Up
Thoracicoabdominal ganglion	269 ± 10	4 of 4	7.60	Up
Salivary gland	15 ± 3	0 of 4	0.43	Down
Crop	11 ± 1	1 of 4	0.30	Down
Midgut	65 ± 2	4 of 4	1.90	Up
Tubule	27 ± 2	4 of 4	0.80	Down
Hindgut	60 ± 4	4 of 4	1.70	Up
Heart	29 ± 2	4 of 4	0.84	None
Fat body	35 ± 3	4 of 4	1.00	None
Ovary	42 ± 5	4 of 4	1.20	None
Testis	31 ± 1	4 of 4	0.90	None
Male accessory glands	7 ± 2	0 of 4	0.20	Down
Virgin spermatheca	22 ± 2	4 of 4	0.63	Down
Mated spermatheca	22 ± 1	4 of 4	0.62	Down
Adult carcass	36 ± 3	4 of 4	1.00	None
Larval CNS	32 ± 4	4 of 4	0.92	None
Larval Salivary gland	12 ± 2	0 of 4	0.36	Down
Larval midgut	84 ± 2	4 of 4	2.39	Up
Larval tubule	51 ± 6	4 of 4	1.50	None
Larval hindgut	39 ± 3	4 of 4	1.11	None
Larval fat body	26 ± 5	2 of 4	0.70	None
Larval trachea	25 ± 3	4 of 4	0.71	Down
Larval carcass	13 ± 2	0 of 4	0.38	Down
S2 cells (growing)	120 ± 6	4 of 4	3.42	Up
Whole fly	35 ± 2	4 of 4

Looking for CG10076-RD. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720