FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10078-RB through 18771 annotations produced 1 hits

Phosphoribosylamidotransferase 2 (Prat2):

Annotation Number : CG10078
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041194
Gbrowse : chr3L:6905098-6907958 (-) // 99.69 //
Probeset : 1624586_a_at
Accessions : protein= NP_523949; /// NP_729191;, nucleotide= NM_079225; /// NM_168181;
Interpro : "0004044 // amidophosphoribosyltransferase activity // inferred from sequence or structural similarity /// 0004044 // am
FlyMine data for FBgn0041194.
BDGP gene expression has embryonic in situ data for Prat2: 19 pix of staining in 2 body parts.
BioGrid reports that CG10078 interacts with CG3332 CG5734 .
VDRC has 3 RNAi stocks for FBgn0041194 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	24 ± 2	4 of 4	0.10	Down
Head	814 ± 60	4 of 4	4.30	Up
Eye	398 ± 60	4 of 4	2.10	Up
Thoracicoabdominal ganglion	26 ± 1	4 of 4	0.10	Down
Salivary gland	8 ± 1	0 of 4	0.04	Down
Crop	18 ± 3	4 of 4	0.10	Down
Midgut	8 ± 2	0 of 4	0.00	Down
Tubule	37 ± 7	3 of 4	0.20	Down
Hindgut	59 ± 2	4 of 4	0.30	Down
Heart	703 ± 67	4 of 4	3.71	Up
Fat body	1453 ± 145	4 of 4	7.67	Up
Ovary	4 ± 0	0 of 4	0.00	Down
Testis	10 ± 0	4 of 4	0.10	Down
Male accessory glands	10 ± 3	0 of 4	0.10	Down
Virgin spermatheca	2497 ± 185	4 of 4	13.18	Up
Mated spermatheca	1365 ± 194	4 of 4	7.20	Up
Adult carcass	790 ± 32	4 of 4	4.20	Up
Larval CNS	3 ± 1	0 of 4	0.02	Down
Larval Salivary gland	19 ± 1	4 of 4	0.11	Down
Larval midgut	4 ± 1	0 of 4	0.02	Down
Larval tubule	10 ± 0	3 of 4	0.10	Down
Larval hindgut	17 ± 5	4 of 4	0.09	Down
Larval fat body	2935 ± 278	4 of 4	15.50	Up
Larval trachea	16 ± 7	4 of 4	0.09	Down
Larval carcass	7 ± 2	0 of 4	0.04	Down
S2 cells (growing)	6 ± 0	0 of 4	0.04	Down
Whole fly	189 ± 15	4 of 4

Looking for CG10078-RB. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720