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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10080-RA through 18771 annotations produced 1 hits



mahjong (mahj):

Annotation Number : CG10080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034641
Gbrowse : chr2R:17512539-17518766 (+) // 100.0 //
Probeset : 1635568_at
Accessions : protein= NP_611592;, nucleotide= NM_137748;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0034641.
BioGrid reports that CG10080 interacts with CG4983 .
TRiP has 1 RNAi stocks for FBgn0034641 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034641 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 ± 34 of 4 0.50Down
Head45 ± 34 of 4 0.40Down
Eye45 ± 14 of 4 0.41Down
Thoracicoabdominal ganglion54 ± 34 of 4 0.50Down
Salivary gland72 ± 64 of 4 0.65Down
Crop64 ± 24 of 4 0.60Down
Midgut62 ± 54 of 4 0.60Down
Tubule74 ± 74 of 4 0.70Down
Hindgut55 ± 24 of 4 0.50Down
Heart45 ± 24 of 4 0.41Down
Fat body70 ± 44 of 4 0.64Down
Ovary225 ± 74 of 4 2.10Up
Testis22 ± 14 of 4 0.20Down
Male accessory glands125 ± 64 of 4 1.10None
Virgin spermatheca71 ± 14 of 4 0.65Down
Mated spermatheca86 ± 24 of 4 0.79None
Adult carcass64 ± 44 of 4 0.60Down
Larval CNS108 ± 114 of 4 0.98None
Larval Salivary gland76 ± 24 of 4 0.70Down
Larval midgut35 ± 34 of 4 0.32Down
Larval tubule30 ± 14 of 4 0.30Down
Larval hindgut65 ± 44 of 4 0.59Down
Larval fat body42 ± 34 of 4 0.40Down
Larval trachea98 ± 164 of 4 0.89None
Larval carcass61 ± 34 of 4 0.56Down
S2 cells (growing)152 ± 54 of 4 1.38Up
Whole fly110 ± 84 of 4

Looking for CG10080-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime