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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10081-RA through 18771 annotations produced 1 hits



(CG10081):

Annotation Number : CG10081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034441
Gbrowse : chr2R:15273428-15276823 (+) // 99.78 //
Probeset : 1636402_at
Accessions : protein= NP_611418;, nucleotide= NM_137574;
Interpro : 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from
FlyMine data for FBgn0034441.
BioGrid reports that CG10081 interacts with CG32372 .
VDRC has 1 RNAi stocks for FBgn0034441 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.70None
Head3 ± 10 of 4 0.70None
Eye5 ± 10 of 4 1.15None
Thoracicoabdominal ganglion7 ± 11 of 4 1.50None
Salivary gland7 ± 40 of 4 1.51None
Crop5 ± 10 of 4 1.10None
Midgut9 ± 10 of 4 1.90None
Tubule5 ± 00 of 4 1.20None
Hindgut5 ± 10 of 4 1.00None
Heart2 ± 10 of 4 0.49None
Fat body12 ± 20 of 4 2.55Up
Ovary3 ± 00 of 4 0.60None
Testis2 ± 00 of 4 0.40Down
Male accessory glands5 ± 10 of 4 1.20None
Virgin spermatheca8 ± 22 of 4 1.71None
Mated spermatheca7 ± 00 of 4 1.56Up
Adult carcass13 ± 10 of 4 2.80Up
Larval CNS5 ± 10 of 4 1.01None
Larval Salivary gland9 ± 11 of 4 1.95None
Larval midgut9 ± 21 of 4 1.83None
Larval tubule7 ± 00 of 4 1.60Up
Larval hindgut6 ± 11 of 4 1.21None
Larval fat body9 ± 30 of 4 1.90None
Larval trachea4 ± 20 of 4 1.00None
Larval carcass8 ± 01 of 4 1.71Up
S2 cells (growing)4 ± 00 of 4 0.97None
Whole fly5 ± 00 of 4

Looking for CG10081-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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