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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10089-RB through 18771 annotations produced 1 hits



MKP-like (CG10089):

Annotation Number : CG10089
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036369
Gbrowse : chr3L:13461113-13467643 (-) // 100.0 //
Probeset : 1633800_s_at
Accessions : protein= NP_648654; /// NP_729907; /// NP_729908; /// NP_729909;, nucleotide= NM_140397; /// NM_168548; /// NM_168549; /// NM_168550;
Interpro : 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008138 //
FlyMine data for FBgn0036369.
BDGP gene expression has embryonic in situ data for CG10089: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 12 of 4 0.00Down
Head8 21 of 4 0.00Down
Eye3 10 of 4 0.02Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland4 10 of 4 0.02Down
Crop11 04 of 4 0.10Down
Midgut6 21 of 4 0.00Down
Tubule4 10 of 4 0.00Down
Hindgut6 20 of 4 0.00Down
Heart4 02 of 4 0.02Down
Fat body4 40 of 4 0.02Down
Ovary22 54 of 4 0.10Down
Testis1824 154 of 4 8.10Up
Male accessory glands8 11 of 4 0.00Down
Virgin spermatheca3 10 of 4 0.01Down
Mated spermatheca3 20 of 4 0.01Down
Adult carcass7 20 of 4 0.00Down
Larval CNS4 03 of 4 0.02Down
Larval Salivary gland3 10 of 4 0.01Down
Larval midgut4 10 of 4 0.02Down
Larval tubule4 00 of 4 0.00Down
Larval hindgut8 03 of 4 0.04Down
Larval fat body192 1014 of 4 0.90None
Larval trachea16 104 of 4 0.07Down
Larval carcass5 10 of 4 0.02Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly224 214 of 4

Looking for CG10089-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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