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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10092-RA through 18771 annotations produced 1 hits



arginyl tRNA ligase (CG10092):

Annotation Number : CG10092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037526
Gbrowse : chr3R:3712805-3715058 (+) // 100.0 //
Probeset : 1624666_at
Accessions : protein= NP_649745;, nucleotide= NM_141488;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0037526.
BDGP gene expression has embryonic in situ data for CG10092: 4 pix of staining in 1 body parts.
Homophila reports that CG10092 is a close match (4e-75) to human gene PCH6;RARS2;RARSL (NP_064716), a gene associated with Pontocerebellar hypoplasia, type 6, 611523 (3).
BioGrid reports that CG10092 interacts with CG17358 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 34 of 4 0.70Down
Head25 ± 14 of 4 0.50Down
Eye25 ± 14 of 4 0.51Down
Thoracicoabdominal ganglion44 ± 34 of 4 0.90None
Salivary gland107 ± 64 of 4 2.10Up
Crop82 ± 54 of 4 1.60Up
Midgut48 ± 24 of 4 0.90None
Tubule108 ± 54 of 4 2.10Up
Hindgut65 ± 34 of 4 1.30Up
Heart33 ± 14 of 4 0.65Down
Fat body45 ± 94 of 4 0.88None
Ovary104 ± 34 of 4 2.10Up
Testis15 ± 04 of 4 0.30Down
Male accessory glands36 ± 14 of 4 0.70Down
Virgin spermatheca45 ± 24 of 4 0.88None
Mated spermatheca53 ± 34 of 4 1.05None
Adult carcass30 ± 33 of 4 0.60Down
Larval CNS66 ± 34 of 4 1.29Up
Larval Salivary gland101 ± 44 of 4 1.99Up
Larval midgut59 ± 54 of 4 1.16None
Larval tubule99 ± 14 of 4 1.90Up
Larval hindgut101 ± 44 of 4 1.99Up
Larval fat body32 ± 14 of 4 0.60Down
Larval trachea42 ± 24 of 4 0.83None
Larval carcass44 ± 34 of 4 0.88None
S2 cells (growing)55 ± 14 of 4 1.09None
Whole fly51 ± 34 of 4

Looking for CG10092-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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