FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10098-RA through 18771 annotations produced 1 hits

(CG10098):

Annotation Number : CG10098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037472
Gbrowse : chr3R:2950271-2952232 (+) // 99.74 //
Probeset : 1629956_at
Accessions : protein= NP_649694;, nucleotide= NM_141437;
FlyMine data for FBgn0037472.
BDGP gene expression has embryonic in situ data for CG10098: 4 pix of staining in 1 body parts.
BioGrid reports that CG10098 interacts with CG12363 CG5119 .
VDRC has 2 RNAi stocks for FBgn0037472 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	522 ± 8	4 of 4	3.00	Up
Head	227 ± 12	4 of 4	1.30	Up
Eye	148 ± 6	4 of 4	0.86	Down
Thoracicoabdominal ganglion	738 ± 10	4 of 4	4.30	Up
Salivary gland	234 ± 15	4 of 4	1.36	Up
Crop	100 ± 5	4 of 4	0.60	Down
Midgut	73 ± 3	4 of 4	0.40	Down
Tubule	97 ± 5	4 of 4	0.60	Down
Hindgut	79 ± 3	4 of 4	0.50	Down
Heart	84 ± 5	4 of 4	0.49	Down
Fat body	49 ± 9	4 of 4	0.29	Down
Ovary	413 ± 3	4 of 4	2.40	Up
Testis	107 ± 5	4 of 4	0.60	Down
Male accessory glands	188 ± 7	4 of 4	1.10	None
Virgin spermatheca	102 ± 3	4 of 4	0.60	Down
Mated spermatheca	122 ± 6	4 of 4	0.71	Down
Adult carcass	49 ± 3	4 of 4	0.30	Down
Larval CNS	759 ± 58	4 of 4	4.41	Up
Larval Salivary gland	721 ± 23	4 of 4	4.19	Up
Larval midgut	93 ± 4	4 of 4	0.55	Down
Larval tubule	184 ± 3	4 of 4	1.10	None
Larval hindgut	160 ± 9	4 of 4	0.93	None
Larval fat body	110 ± 11	4 of 4	0.60	Down
Larval trachea	407 ± 71	4 of 4	2.37	Up
Larval carcass	219 ± 20	4 of 4	1.28	None
S2 cells (growing)	196 ± 3	4 of 4	1.14	Up
Whole fly	172 ± 6	4 of 4

Looking for CG10098-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720