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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10107-RA through 18771 annotations produced 1 hits



(CG10107):

Annotation Number : CG10107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035713
Gbrowse : chr3L:6737525-6745375 (-) // 100.0 //
Probeset : 1636649_a_at
Accessions : protein= NP_648056; /// NP_788470; /// NP_996008;, nucleotide= NM_139799; /// NM_176292; /// NM_206286;
Interpro : 0008234 // cysteine-type peptidase activity // inferred from sequence or structural similarity /// 0008234 // cysteine-t
FlyMine data for FBgn0035713.
BDGP gene expression has embryonic in situ data for CG10107: 15 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0035713 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035713 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain150 ± 94 of 4 1.40Up
Head66 ± 64 of 4 0.60Down
Eye77 ± 44 of 4 0.75None
Thoracicoabdominal ganglion127 ± 44 of 4 1.20None
Salivary gland137 ± 84 of 4 1.31Up
Crop65 ± 94 of 4 0.60Down
Midgut34 ± 61 of 4 0.30Down
Tubule89 ± 24 of 4 0.90Down
Hindgut62 ± 54 of 4 0.60Down
Heart50 ± 24 of 4 0.49Down
Fat body35 ± 64 of 4 0.34Down
Ovary206 ± 84 of 4 2.00Up
Testis260 ± 224 of 4 2.50Up
Male accessory glands135 ± 104 of 4 1.30None
Virgin spermatheca63 ± 74 of 4 0.61Down
Mated spermatheca59 ± 54 of 4 0.57Down
Adult carcass81 ± 44 of 4 0.80None
Larval CNS182 ± 84 of 4 1.75Up
Larval Salivary gland83 ± 54 of 4 0.80None
Larval midgut17 ± 11 of 4 0.16Down
Larval tubule57 ± 34 of 4 0.50Down
Larval hindgut60 ± 64 of 4 0.58Down
Larval fat body50 ± 34 of 4 0.50Down
Larval trachea104 ± 24 of 4 1.00None
Larval carcass91 ± 104 of 4 0.87None
S2 cells (growing)126 ± 34 of 4 1.22None
Whole fly104 ± 104 of 4

Looking for CG10107-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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