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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10108-RA through 18771 annotations produced 1 hits

phyllopod (phyl):

Annotation Number : CG10108
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013725
Gbrowse : chr2R:10314840-10319840 (-) // 100.0 //
Probeset : 1624262_at
Accessions : protein= NP_725394;, nucleotide= NM_166055;
Pathway : 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0013725.
BDGP gene expression has embryonic in situ data for phyl: 41 pix of staining in 18 body parts.
BioGrid reports that CG10108 interacts with CG13030 CG17870 CG1856 CG8598 CG9949 CG1104 CG11486 CG11635 CG12085 CG1242 CG1354 CG14053 CG14696 CG2116 CG3099 CG31618 CG3422 CG3726 CG3847 CG4057 CG4145 CG4282 CG4798 CG5771 CG5792 CG5933 CG5973 CG6338 CG6767 CG6779 CG7518 CG7809 CG8301 CG9277 CG2275 CG2845 CG2845 CG9375 CG9375 CG9375 CG18085 CG9949 CG9949 CG9949 CG9949 CG11502 CG1856 CG1856 CG1856 CG1856 CG3936 CG9375 CG9375 CG9375 CG8817 CG9949 CG1856 CG4063 CG4063 .
TRiP has 1 RNAi stocks for FBgn0013725 available for purchase.
VDRC has 1 RNAi stocks for FBgn0013725 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain491 134 of 422.10Up
Head109 64 of 4 4.90Up
Eye87 34 of 4 3.91Up
Thoracicoabdominal ganglion372 54 of 416.70Up
Salivary gland12 30 of 4 0.57None
Crop7 11 of 4 0.40Down
Midgut7 30 of 4 0.30Down
Tubule6 10 of 4 0.30Down
Hindgut7 00 of 4 0.30Down
Heart4 11 of 4 0.21Down
Fat body17 72 of 4 0.79None
Ovary6 12 of 4 0.30Down
Testis31 14 of 4 1.40None
Male accessory glands12 21 of 4 0.60None
Virgin spermatheca14 12 of 4 0.63None
Mated spermatheca19 22 of 4 0.90None
Adult carcass25 23 of 4 1.10None
Larval CNS293 34 of 413.20Up
Larval Salivary gland9 21 of 4 0.40Down
Larval midgut14 30 of 4 0.64None
Larval tubule7 20 of 4 0.30Down
Larval hindgut7 00 of 4 0.33Down
Larval fat body9 11 of 4 0.40Down
Larval trachea7 41 of 4 0.32Down
Larval carcass11 21 of 4 0.50Down
S2 cells (growing)4 10 of 4 0.21Down
Whole fly22 34 of 4

Looking for CG10108-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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