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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10118-RA through 18771 annotations produced 1 hits



tyrosine hydroxylase (ple):

Annotation Number : CG10118
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005626
Gbrowse : chr3L:6706454-6712624 (-) // 100.0 //
Probeset : 1624452_a_at
Accessions : protein= NP_476897; /// NP_476898;, nucleotide= NM_057549; /// NM_057550;
Interpro : "0004497 // monooxygenase activity // inferred from electronic annotation /// 0004511 // tyrosine 3-monooxygenase activi
FlyMine data for FBgn0005626.
BDGP gene expression has embryonic in situ data for ple: 22 pix of staining in 10 body parts.
Homophila reports that CG10118 is a close match (7e-110) to human gene NTPH;TPH2 (NP_775489), a gene associated with {Unipolar depression, susceptibility to}, 608516 (3).
BioGrid reports that CG10118 interacts with CG5546 CG10497 CG11380 CG14684 CG15697 CG1676 CG1825 CG3342 CG5105 CG5112 CG5263 CG5303 CG6175 CG6743 CG7001 CG7757 CG7824 CG9786 CG9441 CG9441 CG10697 CG10697 CG33343 Dmel CR11700 .
TRiP has 1 RNAi stocks for FBgn0005626 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005626 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 124 of 426.20Up
Head38 ± 44 of 4 8.20Up
Eye3 ± 10 of 4 0.80None
Thoracicoabdominal ganglion48 ± 24 of 410.30Up
Salivary gland1 ± 00 of 4 0.21None
Crop1 ± 00 of 4 0.30None
Midgut3 ± 10 of 4 0.80None
Tubule2 ± 00 of 4 0.50Down
Hindgut4 ± 10 of 4 0.90None
Heart1 ± 00 of 4 0.36None
Fat body3 ± 40 of 4 0.78None
Ovary2 ± 00 of 4 0.40None
Testis0 ± 00 of 4 0.00Down
Male accessory glands5 ± 20 of 4 1.10None
Virgin spermatheca3 ± 10 of 4 0.66None
Mated spermatheca2 ± 10 of 4 0.47None
Adult carcass3 ± 10 of 4 0.70None
Larval CNS24 ± 44 of 4 5.23Up
Larval Salivary gland2 ± 10 of 4 0.52None
Larval midgut2 ± 00 of 4 0.46None
Larval tubule2 ± 20 of 4 0.50None
Larval hindgut2 ± 00 of 4 0.43None
Larval fat body0 ± 00 of 4 0.20None
Larval trachea1 ± 10 of 4 0.31None
Larval carcass10 ± 52 of 4 2.27None
S2 cells (growing)2 ± 10 of 4 0.51None
Whole fly4 ± 12 of 4

Looking for CG10118-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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