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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10124-RA through 18771 annotations produced 1 hits



eIF4E-4 (eIF4E-4):

Annotation Number : CG10124
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035709
Gbrowse : chr3L:6657327-6658741 (-) // 100.0 //
Probeset : 1634082_at
Accessions : protein= NP_648052;, nucleotide= NM_139795;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0016281 // eukaryotic translation initiation factor 4F c
Interpro : 0000339 // RNA cap binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred fro
FlyMine data for FBgn0035709.
VDRC has 1 RNAi stocks for FBgn0035709 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.10Down
Head5 10 of 4 0.00Down
Eye2 10 of 4 0.02Down
Thoracicoabdominal ganglion4 20 of 4 0.00Down
Salivary gland17 00 of 4 0.15Down
Crop7 10 of 4 0.10Down
Midgut8 10 of 4 0.10Down
Tubule9 10 of 4 0.10Down
Hindgut7 20 of 4 0.10Down
Heart2 10 of 4 0.02Down
Fat body13 41 of 4 0.12Down
Ovary1 00 of 4 0.00Down
Testis1473 594 of 412.80Up
Male accessory glands8 20 of 4 0.10Down
Virgin spermatheca15 11 of 4 0.13Down
Mated spermatheca18 50 of 4 0.16Down
Adult carcass6 30 of 4 0.10Down
Larval CNS6 21 of 4 0.06Down
Larval Salivary gland6 20 of 4 0.06Down
Larval midgut2 00 of 4 0.02Down
Larval tubule9 10 of 4 0.10Down
Larval hindgut2 00 of 4 0.02Down
Larval fat body91 433 of 4 0.80None
Larval trachea4 40 of 4 0.04Down
Larval carcass7 10 of 4 0.06Down
S2 cells (growing)2 10 of 4 0.03Down
Whole fly114 14 of 4

Looking for CG10124-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime