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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10129-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3L:6587037-6596466 (-) // 100.0 //):

Annotation Number : CG10129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr3-17
Gbrowse :
Probeset : 1634330_at
Accessions : protein= EC:3.4.-.- /// EC:3.4.21.-, nucleotide=
Interpro : "0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // non-traceable author statem
FlyMine data for chr3-17.
Homophila reports that CG10129 is a close match (4e-11) to human gene LRP8;APOER2;MCI1 (NP_004622), a gene associated with {Myocardial infarction, susceptibility to}, 608446 (3).
BioGrid reports that CG10129 interacts with CG1505 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye3 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland6 ± 10 of 4 0.07Down
Crop1 ± 00 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule4 ± 10 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body2 ± 20 of 4 0.03Down
Ovary216 ± 444 of 4 2.40None
Testis7 ± 10 of 4 0.10Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca2 ± 00 of 4 0.03Down
Adult carcass18 ± 121 of 4 0.20Down
Larval CNS2 ± 30 of 4 0.03Down
Larval Salivary gland4 ± 20 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.03Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass3 ± 10 of 4 0.03Down
S2 cells (growing)12 ± 11 of 4 0.14Down
Whole fly90 ± 224 of 4

Looking for CG10129-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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