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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10130-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2R:10506231-10507189 (+) // 100.0 //):

Annotation Number : CG10130
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1627382_at
Accessions : protein= , nucleotide=
Interpro : "0006616 // SRP-dependent cotranslational protein targeting to membrane
BioGrid reports that CG10130 interacts with CG6667 CG9375 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain764 ± 174 of 4 0.70Down
Head1320 ± 494 of 4 1.10None
Eye998 ± 224 of 4 0.87None
Thoracicoabdominal ganglion703 ± 154 of 4 0.60Down
Salivary gland4376 ± 1364 of 4 3.80Up
Crop1192 ± 604 of 4 1.00None
Midgut1935 ± 344 of 4 1.70Up
Tubule2461 ± 2324 of 4 2.10Up
Hindgut1067 ± 284 of 4 0.90None
Heart1414 ± 834 of 4 1.23Up
Fat body2288 ± 2824 of 4 1.99Up
Ovary1254 ± 374 of 4 1.10None
Testis976 ± 184 of 4 0.80None
Male accessory glands3859 ± 804 of 4 3.40Up
Virgin spermatheca3311 ± 1754 of 4 2.88Up
Mated spermatheca3860 ± 2824 of 4 3.35Up
Adult carcass1240 ± 774 of 4 1.10None
Larval CNS1329 ± 274 of 4 1.15None
Larval Salivary gland5629 ± 2534 of 4 4.89Up
Larval midgut1700 ± 794 of 4 1.48Up
Larval tubule1218 ± 284 of 4 1.10None
Larval hindgut1697 ± 1184 of 4 1.47Up
Larval fat body3130 ± 4194 of 4 2.70Up
Larval trachea2450 ± 3814 of 4 2.13Up
Larval carcass2123 ± 1784 of 4 1.84Up
S2 cells (growing)2020 ± 104 of 4 1.75Up
Whole fly1151 ± 584 of 4

Looking for CG10130-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime