FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10139-RA through 18771 annotations produced 1 hits

(CG10139):

Annotation Number : CG10139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033951
Gbrowse : chr2R:10532775-10533676 (+) // 100.0 //
Probeset : 1640793_at
Accessions : protein= NP_610976;, nucleotide= NM_137132;
FlyMine data for FBgn0033951.
BioGrid reports that CG10139 interacts with CG10139 CG11799 CG17765 CG6371 CG7524 CG7938 CG10315 CG11525 CG4035 CG4832 CG5700 CG8415 CG9277 .
VDRC has 1 RNAi stocks for FBgn0033951 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	240 ± 9	4 of 4	1.80	Up
Head	108 ± 9	4 of 4	0.80	None
Eye	155 ± 5	4 of 4	1.16	Up
Thoracicoabdominal ganglion	164 ± 5	4 of 4	1.20	Up
Salivary gland	133 ± 3	4 of 4	0.99	None
Crop	89 ± 4	4 of 4	0.70	Down
Midgut	93 ± 3	4 of 4	0.70	Down
Tubule	45 ± 1	4 of 4	0.30	Down
Hindgut	94 ± 2	4 of 4	0.70	Down
Heart	74 ± 3	4 of 4	0.56	Down
Fat body	48 ± 5	4 of 4	0.36	Down
Ovary	237 ± 6	4 of 4	1.80	Up
Testis	127 ± 5	4 of 4	0.90	None
Male accessory glands	158 ± 3	4 of 4	1.20	Up
Virgin spermatheca	35 ± 3	4 of 4	0.27	Down
Mated spermatheca	39 ± 2	3 of 4	0.29	Down
Adult carcass	59 ± 4	4 of 4	0.40	Down
Larval CNS	320 ± 11	4 of 4	2.39	Up
Larval Salivary gland	103 ± 4	4 of 4	0.77	Down
Larval midgut	48 ± 0	4 of 4	0.36	Down
Larval tubule	69 ± 1	4 of 4	0.50	Down
Larval hindgut	61 ± 1	4 of 4	0.46	Down
Larval fat body	82 ± 3	4 of 4	0.60	Down
Larval trachea	166 ± 8	4 of 4	1.24	Up
Larval carcass	70 ± 5	4 of 4	0.52	Down
S2 cells (growing)	227 ± 7	4 of 4	1.69	Up
Whole fly	134 ± 5	4 of 4

Looking for CG10139-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720