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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10146-RA through 18771 annotations produced 2 hits



attacin /// attacin (AttA /// AttB):

Annotation Number : CG18372
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0012042 /// FBgn0041581
Gbrowse : chr2R:10636742-10637480 (+) // 100.0 // /// chr2R:10634878-10635603 (+) // 92.14 //
Probeset : 1627551_s_at
Accessions : protein= NP_001163152; /// NP_523745; /// NP_523746;, nucleotide= NM_001169681; /// NM_079021; /// NM_079022;
Pathway : 0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from elect
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0012042 /// FBgn0041581.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 61 of 4 0.20None
Head853 4504 of 4 9.60None
Eye862 4004 of 4 9.73None
Thoracicoabdominal ganglion2 00 of 4 0.00None
Salivary gland4 10 of 4 0.06None
Crop7 30 of 4 0.10None
Midgut1 00 of 4 0.00None
Tubule45 231 of 4 0.50None
Hindgut47 221 of 4 0.50None
Heart313 494 of 4 3.54Up
Fat body352 3734 of 4 3.98None
Ovary44 192 of 4 0.50None
Testis0 00 of 4 0.00None
Male accessory glands1 00 of 4 0.00None
Virgin spermatheca642 2914 of 4 7.25None
Mated spermatheca184 274 of 4 2.08None
Adult carcass271 1184 of 4 3.10None
Larval CNS1 00 of 4 0.02None
Larval Salivary gland28 241 of 4 0.32None
Larval midgut1 00 of 4 0.02None
Larval tubule11 70 of 4 0.10None
Larval hindgut23 71 of 4 0.27None
Larval fat body442 3264 of 4 5.00None
Larval trachea118 224 of 4 1.34None
Larval carcass161 314 of 4 1.83None
S2 cells (growing)47 33 of 4 0.53None
Whole fly88 284 of 4



attacin (AttA):

Annotation Number : CG10146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0012042
Gbrowse : chr2R:10634863-10635720 (+) // 99.25 //
Probeset : 1625124_at
Accessions : protein= NP_523745;, nucleotide= NM_079021;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
FlyMine data for FBgn0012042.
VDRC has 4 RNAi stocks for FBgn0012042 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 34 of 4 0.50None
Head298 1624 of 4 7.40None
Eye55 314 of 4 1.37None
Thoracicoabdominal ganglion8 10 of 4 0.20None
Salivary gland2 00 of 4 0.05None
Crop11 01 of 4 0.30None
Midgut21 24 of 4 0.50None
Tubule23 112 of 4 0.60None
Hindgut18 83 of 4 0.50None
Heart18 53 of 4 0.47None
Fat body82 844 of 4 2.05None
Ovary23 54 of 4 0.60None
Testis2 10 of 4 0.10None
Male accessory glands6 20 of 4 0.20None
Virgin spermatheca556 2874 of 413.80None
Mated spermatheca120 324 of 4 2.99None
Adult carcass61 204 of 4 1.50None
Larval CNS3 20 of 4 0.08None
Larval Salivary gland12 42 of 4 0.30None
Larval midgut11 41 of 4 0.28None
Larval tubule6 20 of 4 0.10None
Larval hindgut16 24 of 4 0.40None
Larval fat body132 1014 of 4 3.30None
Larval trachea22 164 of 4 0.56None
Larval carcass66 184 of 4 1.66None
S2 cells (growing)4 10 of 4 0.10None
Whole fly40 134 of 4

Looking for CG10146-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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