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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10147-RA through 18771 annotations produced 1 hits



(CG10147):

Annotation Number : CG10147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035702
Gbrowse : chr3L:6480034-6481441 (-) // 100.0 //
Probeset : 1624039_at
Accessions : protein= NP_648046;, nucleotide= NM_139789;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0035702.
Homophila reports that CG10147 is a close match (4e-11) to human gene ACLS;GLI3;PAPA;PAPB (NP_000159), a gene associated with Acrocallosal syndrome, 200990 (3);Greig cephalopolysyndactyly syndrome, 175700 (3);Pallister-Hall syndrome, 146510 (3);Polydactyly, postaxial, types A1 and B, 174200 (3);Polydactyly, preaxial, type IV, 174700 (3);{Hypothalamic hamartomas, somatic}, 241800 (3).
BioGrid reports that CG10147 interacts with CG15218 CG3735 CG5939 CG6315 CG6607 CG9975 .
TRiP has 1 RNAi stocks for FBgn0035702 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035702 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 14 of 4 1.70Up
Head24 ± 60 of 4 1.30None
Eye10 ± 10 of 4 0.57None
Thoracicoabdominal ganglion9 ± 20 of 4 0.50None
Salivary gland18 ± 50 of 4 1.00None
Crop49 ± 54 of 4 2.70Up
Midgut31 ± 70 of 4 1.70None
Tubule7 ± 10 of 4 0.40Down
Hindgut27 ± 30 of 4 1.50None
Heart10 ± 00 of 4 0.57None
Fat body8 ± 50 of 4 0.45None
Ovary36 ± 54 of 4 2.00Up
Testis3 ± 00 of 4 0.20Down
Male accessory glands5 ± 20 of 4 0.30Down
Virgin spermatheca7 ± 20 of 4 0.39None
Mated spermatheca2 ± 00 of 4 0.14Down
Adult carcass17 ± 50 of 4 0.90None
Larval CNS27 ± 23 of 4 1.49None
Larval Salivary gland6 ± 00 of 4 0.37None
Larval midgut5 ± 00 of 4 0.30None
Larval tubule15 ± 30 of 4 0.80None
Larval hindgut12 ± 30 of 4 0.66None
Larval fat body6 ± 40 of 4 0.40None
Larval trachea19 ± 42 of 4 1.03None
Larval carcass21 ± 20 of 4 1.15None
S2 cells (growing)14 ± 30 of 4 0.78None
Whole fly18 ± 40 of 4

Looking for CG10147-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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