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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10152-RA through 18771 annotations produced 1 hits



beat-IV (beat-IV):

Annotation Number : CG10152
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039089
Gbrowse : chr3R:19383162-19405281 (+) // 99.82 //
Probeset : 1634725_at
Accessions : protein= NP_651156;, nucleotide= NM_142899;
Pathway : 0005576 // extracellular region // non-traceable author statement
FlyMine data for FBgn0039089.
VDRC has 5 RNAi stocks for FBgn0039089 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain389 ± 294 of 423.50Up
Head85 ± 84 of 4 5.20Up
Eye85 ± 74 of 4 5.14Up
Thoracicoabdominal ganglion362 ± 124 of 421.90Up
Salivary gland14 ± 41 of 4 0.87None
Crop6 ± 20 of 4 0.40Down
Midgut3 ± 00 of 4 0.20Down
Tubule5 ± 00 of 4 0.30Down
Hindgut4 ± 10 of 4 0.30Down
Heart3 ± 00 of 4 0.20Down
Fat body24 ± 130 of 4 1.46None
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 10 of 4 0.20Down
Male accessory glands4 ± 20 of 4 0.30Down
Virgin spermatheca16 ± 00 of 4 1.00None
Mated spermatheca16 ± 50 of 4 1.00None
Adult carcass9 ± 30 of 4 0.60None
Larval CNS166 ± 254 of 410.04Up
Larval Salivary gland6 ± 20 of 4 0.40Down
Larval midgut4 ± 10 of 4 0.27Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut7 ± 30 of 4 0.43None
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea7 ± 30 of 4 0.43Down
Larval carcass6 ± 10 of 4 0.40Down
S2 cells (growing)1 ± 00 of 4 0.08Down
Whole fly16 ± 02 of 4

Looking for CG10152-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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