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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10154-RA through 18771 annotations produced 1 hits



(CG10154):

Annotation Number : CG10154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036361
Gbrowse : chr3L:13428922-13430233 (-) // 100.0 //
Probeset : 1623226_at
Accessions : protein= NP_648646;, nucleotide= NM_140389;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0036361.
BDGP gene expression has embryonic in situ data for CG10154: 4 pix of staining in 1 body parts.
BioGrid reports that CG10154 interacts with CG15032 CG15072 CG17824 CG10221 CG10263 CG10305 CG11489 CG11505 CG12723 CG13694 CG15781 CG17369 CG17894 CG3180 CG17420 CG4550 CG4863 CG6647 CG9425 CG9653 CG9704 CG11719 CG18396 CG12163 .
VDRC has 5 RNAi stocks for FBgn0036361 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 21 of 4 0.30None
Head10 10 of 4 0.40None
Eye1 00 of 4 0.08Down
Thoracicoabdominal ganglion12 03 of 4 0.50None
Salivary gland29 11 of 4 1.23None
Crop17 34 of 4 0.70None
Midgut13 23 of 4 0.60None
Tubule10 01 of 4 0.40Down
Hindgut55 144 of 4 2.30None
Heart5 30 of 4 0.25None
Fat body18 34 of 4 0.77None
Ovary8 03 of 4 0.30None
Testis6 21 of 4 0.30None
Male accessory glands14 10 of 4 0.60None
Virgin spermatheca37 114 of 4 1.56None
Mated spermatheca178 1274 of 4 7.47None
Adult carcass19 13 of 4 0.80None
Larval CNS6 31 of 4 0.27None
Larval Salivary gland10 13 of 4 0.45None
Larval midgut3834 2114 of 4160.93Up
Larval tubule14 13 of 4 0.60None
Larval hindgut9 23 of 4 0.38None
Larval fat body12 21 of 4 0.50None
Larval trachea5 10 of 4 0.22None
Larval carcass10 22 of 4 0.42None
S2 cells (growing)10 23 of 4 0.43None
Whole fly23 64 of 4

Looking for CG10154-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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