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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10157-RA through 18771 annotations produced 1 hits



(CG10157):

Annotation Number : CG10157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039099
Gbrowse : chr3R:19504612-19505604 (+) // 100.0 //
Probeset : 1633293_at
Accessions : protein= NP_651166;, nucleotide= NM_142909;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039099.
BioGrid reports that CG10157 interacts with CG17227 CG31038 CG9902 .
VDRC has 4 RNAi stocks for FBgn0039099 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain250 44 of 4 1.00None
Head497 224 of 4 2.00Up
Eye257 584 of 4 1.03None
Thoracicoabdominal ganglion220 24 of 4 0.90None
Salivary gland64 74 of 4 0.26Down
Crop20 23 of 4 0.10Down
Midgut26 24 of 4 0.10Down
Tubule254 374 of 4 1.00None
Hindgut79 34 of 4 0.30Down
Heart924 504 of 4 3.71Up
Fat body1548 1344 of 4 6.21Up
Ovary264 74 of 4 1.10None
Testis201 54 of 4 0.80None
Male accessory glands28 42 of 4 0.10Down
Virgin spermatheca1941 604 of 4 7.78Up
Mated spermatheca1467 654 of 4 5.88Up
Adult carcass759 554 of 4 3.00Up
Larval CNS22 44 of 4 0.09Down
Larval Salivary gland1005 1624 of 4 4.03Up
Larval midgut24 42 of 4 0.10Down
Larval tubule143 34 of 4 0.60Down
Larval hindgut35 74 of 4 0.14Down
Larval fat body2949 3584 of 411.80Up
Larval trachea21 74 of 4 0.09Down
Larval carcass25 61 of 4 0.10Down
S2 cells (growing)13 14 of 4 0.05Down
Whole fly249 154 of 4

Looking for CG10157-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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