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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10161-RA through 18771 annotations produced 1 hits



Eukaryotic initiation factor 3 p66 subunit (eIF-3p66):

Annotation Number : CG10161
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040227
Gbrowse : chr3R:19505766-19508049 (+) // 100.0 //
Probeset : 1630063_a_at
Accessions : protein= NP_524463;, nucleotide= NM_079739;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 000
Interpro : 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation init
FlyMine data for FBgn0040227.
BDGP gene expression has embryonic in situ data for eIF-3p66: 4 pix of staining in 1 body parts.
BioGrid reports that CG10161 interacts with CG2061 CG6608 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain511 ± 94 of 4 0.50Down
Head719 ± 234 of 4 0.60Down
Eye596 ± 174 of 4 0.53Down
Thoracicoabdominal ganglion858 ± 254 of 4 0.80Down
Salivary gland2250 ± 814 of 4 2.00Up
Crop1074 ± 74 of 4 1.00None
Midgut953 ± 354 of 4 0.80Down
Tubule827 ± 544 of 4 0.70Down
Hindgut743 ± 94 of 4 0.70Down
Heart911 ± 354 of 4 0.81Down
Fat body1284 ± 294 of 4 1.14Up
Ovary1398 ± 74 of 4 1.20Up
Testis186 ± 44 of 4 0.20Down
Male accessory glands2457 ± 704 of 4 2.20Up
Virgin spermatheca1522 ± 714 of 4 1.35Up
Mated spermatheca1531 ± 504 of 4 1.36Up
Adult carcass805 ± 444 of 4 0.70Down
Larval CNS1188 ± 114 of 4 1.06None
Larval Salivary gland3066 ± 534 of 4 2.73Up
Larval midgut941 ± 154 of 4 0.84Down
Larval tubule1138 ± 284 of 4 1.00None
Larval hindgut1303 ± 344 of 4 1.16Up
Larval fat body1357 ± 1444 of 4 1.20None
Larval trachea1848 ± 794 of 4 1.64Up
Larval carcass1486 ± 694 of 4 1.32Up
S2 cells (growing)1964 ± 64 of 4 1.75Up
Whole fly1125 ± 334 of 4

Looking for CG10161-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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