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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10165-RA through 18771 annotations produced 1 hits



(CG10165):

Annotation Number : CG10165
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032801
Gbrowse : chr2L:19527274-19530277 (-) // 100.0 //
Probeset : 1637027_s_at
Accessions : protein= NP_609982; /// NP_724208;, nucleotide= NM_136138; /// NM_165309;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0032801.
BDGP gene expression has embryonic in situ data for CG10165: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032801 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 24 of 4 0.20Down
Head130 ± 154 of 4 1.00None
Eye75 ± 74 of 4 0.58Down
Thoracicoabdominal ganglion42 ± 24 of 4 0.30Down
Salivary gland600 ± 384 of 4 4.59Up
Crop172 ± 74 of 4 1.30Up
Midgut931 ± 514 of 4 7.10Up
Tubule1370 ± 444 of 410.50Up
Hindgut399 ± 144 of 4 3.10Up
Heart150 ± 94 of 4 1.15None
Fat body373 ± 964 of 4 2.85Up
Ovary56 ± 24 of 4 0.40Down
Testis37 ± 24 of 4 0.30Down
Male accessory glands362 ± 334 of 4 2.80Up
Virgin spermatheca265 ± 54 of 4 2.03Up
Mated spermatheca264 ± 204 of 4 2.02Up
Adult carcass135 ± 134 of 4 1.00None
Larval CNS36 ± 74 of 4 0.28Down
Larval Salivary gland35 ± 44 of 4 0.27Down
Larval midgut278 ± 304 of 4 2.13Up
Larval tubule176 ± 174 of 4 1.40None
Larval hindgut108 ± 154 of 4 0.83None
Larval fat body24 ± 21 of 4 0.20Down
Larval trachea49 ± 114 of 4 0.38Down
Larval carcass37 ± 53 of 4 0.29Down
S2 cells (growing)157 ± 44 of 4 1.20None
Whole fly130 ± 104 of 4

Looking for CG10165-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime