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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10168-RA through 18771 annotations produced 1 hits


Annotation Number : CG10168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039087
Gbrowse : chr3R:19362760-19364443 (-) // 100.0 //
Probeset : 1638322_at
Accessions : protein= NP_651154;, nucleotide= NM_142897;
Interpro : "0003851 // 2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity // inferred from sequence or structural simil
FlyMine data for FBgn0039087.
Homophila reports that CG10168 is a close match (6e-36) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
TRiP has 1 RNAi stocks for FBgn0039087 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039087 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.50None
Head8 04 of 4 1.00None
Eye3 21 of 4 0.39None
Thoracicoabdominal ganglion6 10 of 4 0.80None
Salivary gland25 40 of 4 3.09Up
Crop6 10 of 4 0.80None
Midgut37 34 of 4 4.60Up
Tubule16 12 of 4 2.00Up
Hindgut16 01 of 4 2.00Up
Heart3 10 of 4 0.42None
Fat body11 12 of 4 1.47Up
Ovary4 10 of 4 0.50Down
Testis13 00 of 4 1.60Up
Male accessory glands10 30 of 4 1.20None
Virgin spermatheca14 02 of 4 1.72Up
Mated spermatheca11 32 of 4 1.42None
Adult carcass5 10 of 4 0.70None
Larval CNS6 21 of 4 0.84None
Larval Salivary gland7 10 of 4 0.97None
Larval midgut34 34 of 4 4.28Up
Larval tubule5 10 of 4 0.70None
Larval hindgut11 12 of 4 1.45None
Larval fat body10 10 of 4 1.30None
Larval trachea4 00 of 4 0.56Down
Larval carcass7 00 of 4 0.92None
S2 cells (growing)6 10 of 4 0.79None
Whole fly8 01 of 4

Looking for CG10168-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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