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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10174-RA through 18771 annotations produced 1 hits



Drosophila nuclear transport factor-2-related (Ntf-2r):

Annotation Number : CG10174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032680
Gbrowse : chr2L:18454721-18455332 (+) // 100.0 //
Probeset : 1625502_at
Accessions : protein= NP_609878;, nucleotide= NM_136034;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032680.
BioGrid reports that CG10174 interacts with CG12081 CG9495 .
TRiP has 1 RNAi stocks for FBgn0032680 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032680 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.20Down
Head10 10 of 4 0.30Down
Eye5 20 of 4 0.14Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland11 32 of 4 0.34Down
Crop2 00 of 4 0.10Down
Midgut7 41 of 4 0.20Down
Tubule6 00 of 4 0.20Down
Hindgut8 30 of 4 0.30Down
Heart2 10 of 4 0.08Down
Fat body12 50 of 4 0.35Down
Ovary5 10 of 4 0.20Down
Testis313 84 of 4 8.90Up
Male accessory glands17 22 of 4 0.50Down
Virgin spermatheca12 10 of 4 0.34Down
Mated spermatheca14 41 of 4 0.41Down
Adult carcass6 20 of 4 0.20Down
Larval CNS10 23 of 4 0.30Down
Larval Salivary gland5 20 of 4 0.15Down
Larval midgut5 10 of 4 0.16Down
Larval tubule6 00 of 4 0.20Down
Larval hindgut6 20 of 4 0.19Down
Larval fat body56 253 of 4 1.60None
Larval trachea8 31 of 4 0.25Down
Larval carcass6 10 of 4 0.17Down
S2 cells (growing)0 00 of 4 0.03Down
Whole fly35 34 of 4

Looking for CG10174-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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