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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10178-RA through 18771 annotations produced 1 hits



(CG10178):

Annotation Number : CG10178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032684
Gbrowse : chr2L:18511622-18513337 (+) // 100.0 //
Probeset : 1628950_at
Accessions : protein= NP_609882;, nucleotide= NM_136038;
Interpro : "0015020 // glucuronosyltransferase activity // inferred from sequence or structural similarity /// 0015020 // glucurono
FlyMine data for FBgn0032684.
Homophila reports that CG10178 is a close match (4e-52) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 2 RNAi stocks for FBgn0032684 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 ± 14 of 4 0.70None
Head208 ± 94 of 4 3.00Up
Eye44 ± 84 of 4 0.64None
Thoracicoabdominal ganglion36 ± 14 of 4 0.50Down
Salivary gland58 ± 43 of 4 0.83None
Crop35 ± 34 of 4 0.50Down
Midgut95 ± 144 of 4 1.40None
Tubule810 ± 574 of 411.50Up
Hindgut182 ± 64 of 4 2.60Up
Heart86 ± 74 of 4 1.23None
Fat body194 ± 374 of 4 2.76Up
Ovary22 ± 04 of 4 0.30Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands32 ± 73 of 4 0.50Down
Virgin spermatheca159 ± 174 of 4 2.27Up
Mated spermatheca88 ± 174 of 4 1.25None
Adult carcass182 ± 74 of 4 2.60Up
Larval CNS5 ± 00 of 4 0.08Down
Larval Salivary gland56 ± 34 of 4 0.81None
Larval midgut92 ± 354 of 4 1.31None
Larval tubule3274 ± 934 of 446.60Up
Larval hindgut121 ± 264 of 4 1.73None
Larval fat body322 ± 644 of 4 4.60Up
Larval trachea71 ± 144 of 4 1.01None
Larval carcass202 ± 963 of 4 2.89None
S2 cells (growing)26 ± 24 of 4 0.38Down
Whole fly70 ± 94 of 4

Looking for CG10178-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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