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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10182-RA through 18771 annotations produced 1 hits



(CG10182):

Annotation Number : CG10182
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039091
Gbrowse : chr3R:19412928-19415537 (-) // 100.0 //
Probeset : 1626764_at
Accessions : protein= NP_651158;, nucleotide= NM_142901;
Interpro : "0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infer
FlyMine data for FBgn0039091.
VDRC has 3 RNAi stocks for FBgn0039091 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head6 ± 10 of 4 0.20Down
Eye2 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland6 ± 30 of 4 0.15Down
Crop5 ± 10 of 4 0.10Down
Midgut430 ± 434 of 411.00Up
Tubule7 ± 00 of 4 0.20Down
Hindgut6 ± 21 of 4 0.20Down
Heart2 ± 00 of 4 0.07Down
Fat body9 ± 31 of 4 0.25Down
Ovary1 ± 00 of 4 0.00Down
Testis3 ± 01 of 4 0.10Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca7 ± 11 of 4 0.20Down
Mated spermatheca6 ± 10 of 4 0.16Down
Adult carcass13 ± 22 of 4 0.40Down
Larval CNS3 ± 20 of 4 0.10Down
Larval Salivary gland5 ± 10 of 4 0.13Down
Larval midgut2835 ± 1034 of 472.46Up
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut30 ± 64 of 4 0.78None
Larval fat body6 ± 20 of 4 0.20Down
Larval trachea2 ± 10 of 4 0.06Down
Larval carcass7 ± 00 of 4 0.19Down
S2 cells (growing)5 ± 20 of 4 0.14Down
Whole fly39 ± 44 of 4

Looking for CG10182-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime