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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10200-RB through 18771 annotations produced 1 hits


Annotation Number : CG10200
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033968
Gbrowse : chr2R:10695928-10697438 (+) // 100.0 //
Probeset : 1628087_s_at
Accessions : protein= NP_610991; /// NP_725421;, nucleotide= NM_137147; /// NM_166071;
FlyMine data for FBgn0033968.
TRiP has 1 RNAi stocks for FBgn0033968 available for purchase.
VDRC has 4 RNAi stocks for FBgn0033968 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 12 of 4 0.30Down
Head450 474 of 411.40Up
Eye16 23 of 4 0.42Down
Thoracicoabdominal ganglion6 10 of 4 0.20Down
Salivary gland2 00 of 4 0.06Down
Crop1295 534 of 432.80Up
Midgut5 10 of 4 0.10Down
Tubule6 20 of 4 0.20Down
Hindgut744 374 of 418.90Up
Heart7 10 of 4 0.20Down
Fat body16 30 of 4 0.41Down
Ovary2 00 of 4 0.10Down
Testis7 00 of 4 0.20Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca5 10 of 4 0.14Down
Mated spermatheca2 00 of 4 0.07Down
Adult carcass49 32 of 4 1.30None
Larval CNS8 10 of 4 0.21Down
Larval Salivary gland59 24 of 4 1.51Up
Larval midgut53 84 of 4 1.35None
Larval tubule18 61 of 4 0.50Down
Larval hindgut3130 244 of 479.36Up
Larval fat body14 50 of 4 0.40Down
Larval trachea1911 1054 of 448.45Up
Larval carcass2734 2744 of 469.31Up
S2 cells (growing)1 00 of 4 0.04Down
Whole fly39 24 of 4

Looking for CG10200-RB. 1 entries matched from 18771, in 3 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime