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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10206-RA through 18771 annotations produced 1 hits

nop5 (nop5):

Annotation Number : CG10206
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026196
Gbrowse : chr2L:6916748-6918741 (-) // 100.0 //
Probeset : 1630950_at
Accessions : protein= NP_477412;, nucleotide= NM_058064;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0026196.
BDGP gene expression has embryonic in situ data for nop5: 17 pix of staining in 27 body parts.
Homophila reports that CG10206 is a close match (2e-24) to human gene PRPF31;PRP31 (NP_056444), a gene associated with Retinitis pigmentosa-11, 600138 (3).
BioGrid reports that CG10206 interacts with CG2677 CG9825 CG10478 CG13688 CG14145 CG14442 .
TRiP has 1 RNAi stocks for FBgn0026196 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 14 of 4 0.10Down
Head116 84 of 4 0.20Down
Eye142 154 of 4 0.27Down
Thoracicoabdominal ganglion73 44 of 4 0.10Down
Salivary gland112 104 of 4 0.21Down
Crop128 54 of 4 0.20Down
Midgut166 94 of 4 0.30Down
Tubule142 414 of 4 0.30Down
Hindgut84 34 of 4 0.20Down
Heart279 184 of 4 0.53Down
Fat body244 274 of 4 0.46Down
Ovary1183 64 of 4 2.20Up
Testis72 14 of 4 0.10Down
Male accessory glands434 274 of 4 0.80None
Virgin spermatheca182 194 of 4 0.34Down
Mated spermatheca349 134 of 4 0.66Down
Adult carcass151 154 of 4 0.30Down
Larval CNS558 164 of 4 1.06None
Larval Salivary gland441 404 of 4 0.84None
Larval midgut163 164 of 4 0.31Down
Larval tubule33 24 of 4 0.10Down
Larval hindgut210 414 of 4 0.40Down
Larval fat body51 44 of 4 0.10Down
Larval trachea1164 2614 of 4 2.20Up
Larval carcass382 944 of 4 0.72None
S2 cells (growing)489 94 of 4 0.93None
Whole fly528 414 of 4

Looking for CG10206-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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