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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10207-RA through 18771 annotations produced 1 hits

Na[+]-dependent inorganic phosphate cotransporter (NaPi-T):

Annotation Number : CG10207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016684
Gbrowse : chr2R:10730215-10733379 (-) // 100.0 //
Probeset : 1623035_at
Accessions : protein= NP_525116;, nucleotide= NM_080377;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0016684.
BDGP gene expression has embryonic in situ data for NaPi-T: 20 pix of staining in 8 body parts.
Homophila reports that CG10207 is a close match (3e-63) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
BioGrid reports that CG10207 interacts with CG9754 .
TRiP has 1 RNAi stocks for FBgn0016684 available for purchase.
VDRC has 3 RNAi stocks for FBgn0016684 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye1 00 of 4 0.04Down
Thoracicoabdominal ganglion5 11 of 4 0.10Down
Salivary gland2 00 of 4 0.06Down
Crop3 10 of 4 0.10Down
Midgut2 00 of 4 0.10Down
Tubule2613 1744 of 460.00Up
Hindgut8 12 of 4 0.20Down
Heart5 11 of 4 0.13Down
Fat body7 71 of 4 0.16Down
Ovary2 00 of 4 0.10Down
Testis0 00 of 4 0.00Down
Male accessory glands2 10 of 4 0.10Down
Virgin spermatheca8 42 of 4 0.19Down
Mated spermatheca2 10 of 4 0.05Down
Adult carcass1 00 of 4 0.00Down
Larval CNS4 23 of 4 0.10Down
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut1 00 of 4 0.02Down
Larval tubule1490 424 of 434.20Up
Larval hindgut5 04 of 4 0.13Down
Larval fat body1 10 of 4 0.00Down
Larval trachea0 00 of 4 0.01Down
Larval carcass5 00 of 4 0.13Down
S2 cells (growing)2 10 of 4 0.06Down
Whole fly43 54 of 4

Looking for CG10207-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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