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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10208-RA through 18771 annotations produced 1 hits



(CG10208):

Annotation Number : CG10208
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039118
Gbrowse : chr3R:19598714-19599845 (-) // 100.0 //
Probeset : 1640857_at
Accessions : protein= NP_651186;, nucleotide= NM_142929;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039118.
BDGP gene expression has embryonic in situ data for CG10208: 9 pix of staining in 1 body parts.
BioGrid reports that CG10208 interacts with CG7564 Dmel CG14425 .
VDRC has 1 RNAi stocks for FBgn0039118 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 24 of 4 1.10None
Head68 ± 54 of 4 1.40Up
Eye53 ± 64 of 4 1.08None
Thoracicoabdominal ganglion67 ± 54 of 4 1.40Up
Salivary gland62 ± 33 of 4 1.28Up
Crop47 ± 44 of 4 1.00None
Midgut158 ± 84 of 4 3.20Up
Tubule268 ± 204 of 4 5.50Up
Hindgut78 ± 24 of 4 1.60Up
Heart75 ± 14 of 4 1.54Up
Fat body144 ± 234 of 4 2.94Up
Ovary36 ± 34 of 4 0.70Down
Testis36 ± 14 of 4 0.70Down
Male accessory glands11 ± 40 of 4 0.20Down
Virgin spermatheca80 ± 44 of 4 1.64Up
Mated spermatheca56 ± 34 of 4 1.15None
Adult carcass69 ± 64 of 4 1.40Up
Larval CNS38 ± 144 of 4 0.79None
Larval Salivary gland19 ± 23 of 4 0.40Down
Larval midgut117 ± 64 of 4 2.39Up
Larval tubule258 ± 94 of 4 5.30Up
Larval hindgut55 ± 14 of 4 1.12None
Larval fat body74 ± 84 of 4 1.50Up
Larval trachea73 ± 74 of 4 1.49Up
Larval carcass26 ± 14 of 4 0.53Down
S2 cells (growing)35 ± 24 of 4 0.72Down
Whole fly49 ± 34 of 4

Looking for CG10208-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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