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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10209-RA through 18771 annotations produced 1 hits



(CG10209):

Annotation Number : CG10209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033971
Gbrowse : chr2R:10733561-10735864 (-) // 100.0 //
Probeset : 1634408_at
Accessions : protein= NP_610994;, nucleotide= NM_137150;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0033971.
BDGP gene expression has embryonic in situ data for CG10209: 10 pix of staining in 5 body parts.
BioGrid reports that CG10209 interacts with CG10209 CG10918 CG11525 CG14374 CG15150 CG15458 CG17362 CG9040 CG10215 CG10650 CG11166 CG13492 CG15224 CG15525 CG18539 CG2371 CG5050 CG33103 .
VDRC has 3 RNAi stocks for FBgn0033971 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain188 34 of 4 1.20None
Head96 64 of 4 0.60None
Eye105 54 of 4 0.69None
Thoracicoabdominal ganglion145 34 of 4 0.90None
Salivary gland148 94 of 4 0.97None
Crop131 24 of 4 0.90None
Midgut115 104 of 4 0.70None
Tubule97 34 of 4 0.60Down
Hindgut113 84 of 4 0.70None
Heart78 64 of 4 0.51Down
Fat body91 124 of 4 0.59Down
Ovary329 164 of 4 2.10Up
Testis77 24 of 4 0.50Down
Male accessory glands84 44 of 4 0.50Down
Virgin spermatheca202 104 of 4 1.31None
Mated spermatheca198 44 of 4 1.29None
Adult carcass97 54 of 4 0.60None
Larval CNS129 134 of 4 0.84None
Larval Salivary gland78 44 of 4 0.51Down
Larval midgut104 94 of 4 0.68None
Larval tubule132 14 of 4 0.90None
Larval hindgut95 74 of 4 0.62Down
Larval fat body112 44 of 4 0.70None
Larval trachea116 154 of 4 0.76None
Larval carcass74 54 of 4 0.48Down
S2 cells (growing)162 64 of 4 1.06None
Whole fly153 184 of 4

Looking for CG10209-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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