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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10210-RA through 18771 annotations produced 1 hits



twister (tst):

Annotation Number : CG10210
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039117
Gbrowse : chr3R:19594120-19598529 (-) // 100.0 //
Probeset : 1624956_at
Accessions : protein= NP_524465;, nucleotide= NM_079741;
Pathway : via spliceosome // inferred from mutant phenotype"
Interpro : 0005634 // nucleus // inferred by curator
FlyMine data for FBgn0039117.
BDGP gene expression has embryonic in situ data for tst: 14 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0039117 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 14 of 4 1.60Up
Head16 ± 02 of 4 1.00None
Eye20 ± 04 of 4 1.20None
Thoracicoabdominal ganglion24 ± 24 of 4 1.50Up
Salivary gland32 ± 54 of 4 1.96Up
Crop23 ± 04 of 4 1.40Up
Midgut24 ± 23 of 4 1.50Up
Tubule24 ± 13 of 4 1.50Up
Hindgut24 ± 24 of 4 1.40Up
Heart20 ± 14 of 4 1.24None
Fat body25 ± 84 of 4 1.50None
Ovary21 ± 04 of 4 1.30None
Testis6 ± 10 of 4 0.40Down
Male accessory glands24 ± 13 of 4 1.50Up
Virgin spermatheca27 ± 24 of 4 1.64Up
Mated spermatheca25 ± 24 of 4 1.55Up
Adult carcass21 ± 21 of 4 1.30None
Larval CNS39 ± 44 of 4 2.35Up
Larval Salivary gland23 ± 33 of 4 1.40None
Larval midgut20 ± 11 of 4 1.22None
Larval tubule23 ± 24 of 4 1.40None
Larval hindgut16 ± 04 of 4 0.98None
Larval fat body15 ± 40 of 4 0.90None
Larval trachea26 ± 44 of 4 1.59Up
Larval carcass22 ± 14 of 4 1.37None
S2 cells (growing)24 ± 14 of 4 1.49Up
Whole fly16 ± 14 of 4

Looking for CG10210-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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