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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10211-RA through 18771 annotations produced 1 hits



(CG10211):

Annotation Number : CG10211
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032685
Gbrowse : chr2L:18517492-18531782 (+) // 100.0 //
Probeset : 1638006_at
Accessions : protein= NP_609883;, nucleotide= NM_136039;
Interpro : 0004601 // peroxidase activity // inferred from sequence or structural similarity /// 0004601 // peroxidase activity //
FlyMine data for FBgn0032685.
BDGP gene expression has embryonic in situ data for CG10211: 15 pix of staining in 10 body parts.
Homophila reports that CG10211 is a close match (3e-35) to human gene DUOX2;THOX2 (NP_054799), a gene associated with Hypothyroidism, congenital, due to DUOX2 deficiency, 607200 (3).
BioGrid reports that CG10211 interacts with CG11786 CG1034 CG15781 .
VDRC has 1 RNAi stocks for FBgn0032685 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10None
Head57 34 of 4 6.80Up
Eye24 33 of 4 2.93Up
Thoracicoabdominal ganglion0 00 of 4 0.10None
Salivary gland8 30 of 4 1.03None
Crop15 00 of 4 1.90None
Midgut2 00 of 4 0.30None
Tubule2 00 of 4 0.30Down
Hindgut9 30 of 4 1.10None
Heart3 10 of 4 0.37None
Fat body2 00 of 4 0.31None
Ovary1 00 of 4 0.20None
Testis44 14 of 4 5.30Up
Male accessory glands2 10 of 4 0.30None
Virgin spermatheca1 00 of 4 0.14None
Mated spermatheca3 20 of 4 0.37None
Adult carcass21 20 of 4 2.60Up
Larval CNS1 10 of 4 0.20None
Larval Salivary gland7 10 of 4 0.92None
Larval midgut2 00 of 4 0.31None
Larval tubule3 10 of 4 0.40None
Larval hindgut205 104 of 424.42Up
Larval fat body6 40 of 4 0.70None
Larval trachea206 674 of 424.54Up
Larval carcass927 954 of 4110.44Up
S2 cells (growing)1 00 of 4 0.23None
Whole fly8 21 of 4

Looking for CG10211-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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