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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10219-RA through 18771 annotations produced 1 hits



Succinate dehydrogenase Cytochrome B small subunit (CG10219):

Annotation Number : CG10219
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039112
Gbrowse : chr3R:19585206-19586318 (-) // 100.0 //
Probeset : 1627518_at
Accessions : protein= NP_651181;, nucleotide= NM_142924;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from e
Interpro : 0000104 // succinate dehydrogenase activity // inferred from sequence or structural similarity /// 0005506 // iron ion b
FlyMine data for FBgn0039112.
BioGrid reports that CG10219 interacts with CG9035 CG1416 CG1660 CG17826 CG6554 .
VDRC has 2 RNAi stocks for FBgn0039112 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain997 54 of 4 1.30Up
Head964 234 of 4 1.20None
Eye1669 854 of 4 2.10Up
Thoracicoabdominal ganglion1309 284 of 4 1.60Up
Salivary gland1534 284 of 4 1.93Up
Crop999 594 of 4 1.30None
Midgut813 334 of 4 1.00None
Tubule1566 614 of 4 2.00Up
Hindgut1430 334 of 4 1.80Up
Heart1075 534 of 4 1.35Up
Fat body592 194 of 4 0.74None
Ovary476 244 of 4 0.60Down
Testis767 254 of 4 1.00None
Male accessory glands539 194 of 4 0.70Down
Virgin spermatheca1218 474 of 4 1.53Up
Mated spermatheca1226 434 of 4 1.54Up
Adult carcass2112 1664 of 4 2.70Up
Larval CNS533 674 of 4 0.67Down
Larval Salivary gland959 314 of 4 1.21None
Larval midgut1298 314 of 4 1.63Up
Larval tubule821 874 of 4 1.00None
Larval hindgut1219 484 of 4 1.53Up
Larval fat body236 44 of 4 0.30Down
Larval trachea644 294 of 4 0.81None
Larval carcass1340 1344 of 4 1.68Up
S2 cells (growing)412 84 of 4 0.52Down
Whole fly795 714 of 4

Looking for CG10219-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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