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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10226-RA through 18771 annotations produced 1 hits



(CG10226):

Annotation Number : CG10226
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035695
Gbrowse : chr3L:6227416-6232689 (-) // 100.0 //
Probeset : 1632500_at
Accessions : protein= NP_648040;, nucleotide= NM_139783;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electr
FlyMine data for FBgn0035695.
BDGP gene expression has embryonic in situ data for CG10226: 4 pix of staining in 1 body parts.
Homophila reports that CG10226 is a close match (1e-11) to human gene ABCA4;ABCR;ARMD2;CORD3;FFM;RP19;STGD1 (NP_000341), a gene associated with Cone-rod dystrophy 3, 604116 (3);Fundus flavimaculatus, 248200 (3);Macular degeneration, age-related, 2, 153800 (3);Retinal dystrophy, early-onset severe, 248200 (3);Retinitis pigmentosa-19, 601718 (3);Stargardt disease-1, 248200 (3).
VDRC has 1 RNAi stocks for FBgn0035695 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain400 ± 104 of 4 9.90Up
Head163 ± 74 of 4 4.00Up
Eye126 ± 84 of 4 3.11Up
Thoracicoabdominal ganglion449 ± 264 of 411.10Up
Salivary gland5 ± 20 of 4 0.15Down
Crop14 ± 14 of 4 0.30Down
Midgut15 ± 24 of 4 0.40Down
Tubule1055 ± 2504 of 426.00Up
Hindgut133 ± 114 of 4 3.30Up
Heart11 ± 23 of 4 0.27Down
Fat body5 ± 10 of 4 0.14Down
Ovary2 ± 10 of 4 0.10Down
Testis25 ± 14 of 4 0.60Down
Male accessory glands7 ± 00 of 4 0.20Down
Virgin spermatheca2 ± 10 of 4 0.06Down
Mated spermatheca4 ± 00 of 4 0.10Down
Adult carcass20 ± 22 of 4 0.50Down
Larval CNS99 ± 194 of 4 2.46Up
Larval Salivary gland3 ± 11 of 4 0.07Down
Larval midgut6 ± 13 of 4 0.15Down
Larval tubule13 ± 24 of 4 0.30Down
Larval hindgut14 ± 14 of 4 0.35Down
Larval fat body8 ± 20 of 4 0.20Down
Larval trachea7 ± 33 of 4 0.18Down
Larval carcass30 ± 44 of 4 0.75None
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly40 ± 34 of 4

Looking for CG10226-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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