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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10240-RA through 18771 annotations produced 1 hits



Cytochrome P450 related BF6-2 (Cyp6a22):

Annotation Number : CG10240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013773
Gbrowse : chr2R:10759196-10760976 (+) // 100.0 //
Probeset : 1631533_at
Accessions : protein= NP_652075;, nucleotide= NM_143818;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0013773.
BDGP gene expression has embryonic in situ data for Cyp6a22: 8 pix of staining in 1 body parts.
Homophila reports that CG10240 is a close match (4e-11) to human gene CPD6;CYP2D6;P450DB1 (NP_001020332), a gene associated with Codeine sensitivity (3);Debrisoquine sensitivity (3);{?Parkinsonism, susceptibility to} (1).
BioGrid reports that CG10240 interacts with CG1151 .
VDRC has 2 RNAi stocks for FBgn0013773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 23 of 4 0.10Down
Head73 14 of 4 0.70Down
Eye23 14 of 4 0.21Down
Thoracicoabdominal ganglion3 00 of 4 0.00Down
Salivary gland16 20 of 4 0.15Down
Crop15 14 of 4 0.10Down
Midgut6 10 of 4 0.10Down
Tubule613 254 of 4 5.50Up
Hindgut23 14 of 4 0.20Down
Heart92 74 of 4 0.83None
Fat body180 324 of 4 1.63Up
Ovary238 54 of 4 2.20Up
Testis6 02 of 4 0.10Down
Male accessory glands31 34 of 4 0.30Down
Virgin spermatheca130 54 of 4 1.18Up
Mated spermatheca98 54 of 4 0.89None
Adult carcass95 64 of 4 0.90None
Larval CNS1 10 of 4 0.02Down
Larval Salivary gland2 00 of 4 0.02Down
Larval midgut3 10 of 4 0.03Down
Larval tubule73 44 of 4 0.70Down
Larval hindgut6 10 of 4 0.06Down
Larval fat body77 94 of 4 0.70Down
Larval trachea4 21 of 4 0.04Down
Larval carcass4 11 of 4 0.04Down
S2 cells (growing)39 14 of 4 0.36Down
Whole fly110 54 of 4

Looking for CG10240-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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