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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10243-RA through 18771 annotations produced 1 hits



Cyp6a19 (Cyp6a19):

Annotation Number : CG10243
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033979
Gbrowse : chr2R:10765292-10767260 (+) // 100.0 //
Probeset : 1639381_at
Accessions : protein= NP_611001;, nucleotide= NM_137157;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0033979.
BDGP gene expression has embryonic in situ data for Cyp6a19: 4 pix of staining in 1 body parts.
Homophila reports that CG10243 is a close match (2e-11) to human gene CPD6;CYP2D6;P450DB1 (NP_001020332), a gene associated with Codeine sensitivity (3);Debrisoquine sensitivity (3);{?Parkinsonism, susceptibility to} (1).
BioGrid reports that CG10243 interacts with CG6950 CG8694 .
VDRC has 3 RNAi stocks for FBgn0033979 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 02 of 4 0.00Down
Head12 04 of 4 0.00Down
Eye11 24 of 4 0.01Down
Thoracicoabdominal ganglion11 13 of 4 0.00Down
Salivary gland27 24 of 4 0.03Down
Crop24 44 of 4 0.00Down
Midgut26 24 of 4 0.00Down
Tubule47 104 of 4 0.10Down
Hindgut27 14 of 4 0.00Down
Heart13 14 of 4 0.02Down
Fat body28 74 of 4 0.04Down
Ovary1656 204 of 4 2.00Up
Testis6 12 of 4 0.00Down
Male accessory glands12 22 of 4 0.00Down
Virgin spermatheca35 44 of 4 0.04Down
Mated spermatheca21 34 of 4 0.03Down
Adult carcass33 74 of 4 0.00Down
Larval CNS6 24 of 4 0.01Down
Larval Salivary gland14 13 of 4 0.02Down
Larval midgut20 24 of 4 0.03Down
Larval tubule16 23 of 4 0.00Down
Larval hindgut21 34 of 4 0.03Down
Larval fat body14 21 of 4 0.00Down
Larval trachea12 53 of 4 0.02Down
Larval carcass10 22 of 4 0.01Down
S2 cells (growing)7 03 of 4 0.01Down
Whole fly816 374 of 4

Looking for CG10243-RA. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime