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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10244-RA through 18771 annotations produced 1 hits



Cad96Ca (Cad96Ca):

Annotation Number : CG10244
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022800
Gbrowse : chr3R:21023292-21034003 (-) // 99.86 //
Probeset : 1623418_at
Accessions : protein= NP_651349;, nucleotide= NM_143092;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inf
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0022800.
BDGP gene expression has embryonic in situ data for Cad96Ca: 11 pix of staining in 10 body parts.
Homophila reports that CG10244 is a close match (2e-11) to human gene AAT3;HNPCC6;LDS1B;LDS2B;MFS2;TGFBR2 (NP_003233), a gene associated with Colorectal cancer, hereditary nonpolyposis, type 6 (3);Esophageal cancer, 133239 (3);Loeys-Dietz syndrome, type 1B, 610168 (3);Loeys-Dietz syndrome, type 2B, 610380 (3).
TRiP has 1 RNAi stocks for FBgn0022800 available for purchase.
VDRC has 5 RNAi stocks for FBgn0022800 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 0.20Down
Head105 ± 34 of 4 3.50Up
Eye161 ± 104 of 4 5.47Up
Thoracicoabdominal ganglion10 ± 03 of 4 0.30Down
Salivary gland13 ± 31 of 4 0.46Down
Crop305 ± 74 of 410.30Up
Midgut9 ± 11 of 4 0.30Down
Tubule6 ± 00 of 4 0.20Down
Hindgut134 ± 54 of 4 4.50Up
Heart15 ± 34 of 4 0.51Down
Fat body12 ± 34 of 4 0.43Down
Ovary1 ± 00 of 4 0.10Down
Testis9 ± 14 of 4 0.30Down
Male accessory glands5 ± 21 of 4 0.20Down
Virgin spermatheca13 ± 04 of 4 0.47Down
Mated spermatheca20 ± 24 of 4 0.70None
Adult carcass107 ± 24 of 4 3.60Up
Larval CNS54 ± 24 of 4 1.85Up
Larval Salivary gland20 ± 04 of 4 0.69None
Larval midgut17 ± 24 of 4 0.59Down
Larval tubule3 ± 20 of 4 0.10Down
Larval hindgut382 ± 74 of 412.93Up
Larval fat body7 ± 10 of 4 0.20Down
Larval trachea631 ± 434 of 421.35Up
Larval carcass388 ± 504 of 413.15Up
S2 cells (growing)4 ± 11 of 4 0.15Down
Whole fly29 ± 34 of 4

Looking for CG10244-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime