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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10246-RA through 18771 annotations produced 1 hits



cytochrome P450 related AF4 (Cyp6a9):

Annotation Number : CG10246
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013771
Gbrowse : chr2R:10766859-10768877 (-) // 100.0 //
Probeset : 1628345_at
Accessions : protein= NP_523748;, nucleotide= NM_079024;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0013771.
Homophila reports that CG10246 is a close match (9e-11) to human gene CYP11A;P450SCC (NP_001093243), a gene associated with Adrenal insufficiency, congenital with or without 46, XY sex reversal (3);Lipoid congenital adrenal hyperplasia, 201710 (3).
BioGrid reports that CG10246 interacts with CG5144 .
VDRC has 4 RNAi stocks for FBgn0013771 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 ± 54 of 4 0.60Down
Head87 ± 74 of 4 1.50Up
Eye20 ± 34 of 4 0.35Down
Thoracicoabdominal ganglion35 ± 24 of 4 0.60Down
Salivary gland103 ± 94 of 4 1.75Up
Crop218 ± 224 of 4 3.70Up
Midgut200 ± 104 of 4 3.40Up
Tubule304 ± 504 of 4 5.20Up
Hindgut227 ± 204 of 4 3.90Up
Heart42 ± 34 of 4 0.73None
Fat body114 ± 254 of 4 1.94Up
Ovary49 ± 14 of 4 0.80None
Testis14 ± 14 of 4 0.20Down
Male accessory glands29 ± 14 of 4 0.50Down
Virgin spermatheca188 ± 164 of 4 3.19Up
Mated spermatheca172 ± 144 of 4 2.93Up
Adult carcass53 ± 24 of 4 0.90None
Larval CNS14 ± 34 of 4 0.25Down
Larval Salivary gland14 ± 14 of 4 0.24Down
Larval midgut115 ± 54 of 4 1.97Up
Larval tubule52 ± 74 of 4 0.90None
Larval hindgut200 ± 464 of 4 3.40None
Larval fat body11 ± 23 of 4 0.20Down
Larval trachea57 ± 254 of 4 0.97None
Larval carcass12 ± 14 of 4 0.20Down
S2 cells (growing)40 ± 64 of 4 0.69None
Whole fly58 ± 54 of 4

Looking for CG10246-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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