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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10247-RA through 18771 annotations produced 1 hits



Cyp6a21 (Cyp6a21):

Annotation Number : CG10247
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033981
Gbrowse : chr2R:10772766-10774456 (-) // 100.0 //
Probeset : 1624939_at
Accessions : protein= NP_611003;, nucleotide= NM_137159;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0033981.
BDGP gene expression has embryonic in situ data for Cyp6a21: 4 pix of staining in 1 body parts.
Homophila reports that CG10247 is a close match (5e-11) to human gene CPD6;CYP2D6;P450DB1 (NP_001020332), a gene associated with Codeine sensitivity (3);Debrisoquine sensitivity (3);{?Parkinsonism, susceptibility to} (1).
VDRC has 3 RNAi stocks for FBgn0033981 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 11 of 4 0.10Down
Head113 144 of 4 2.30Up
Eye48 54 of 4 0.97None
Thoracicoabdominal ganglion5 12 of 4 0.10Down
Salivary gland15 21 of 4 0.31Down
Crop18 14 of 4 0.40Down
Midgut951 594 of 418.90Up
Tubule251 284 of 4 5.00Up
Hindgut232 194 of 4 4.60Up
Heart17 14 of 4 0.36Down
Fat body54 84 of 4 1.08None
Ovary1 00 of 4 0.00Down
Testis5 13 of 4 0.10Down
Male accessory glands7 21 of 4 0.20Down
Virgin spermatheca37 44 of 4 0.74None
Mated spermatheca19 14 of 4 0.38Down
Adult carcass126 94 of 4 2.50Up
Larval CNS2 02 of 4 0.05Down
Larval Salivary gland2 00 of 4 0.05Down
Larval midgut499 244 of 4 9.90Up
Larval tubule148 74 of 4 2.90Up
Larval hindgut98 154 of 4 1.94None
Larval fat body233 304 of 4 4.60Up
Larval trachea6 11 of 4 0.13Down
Larval carcass58 114 of 4 1.15None
S2 cells (growing)3 02 of 4 0.08Down
Whole fly50 94 of 4

Looking for CG10247-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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