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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10249-RC through 18771 annotations produced 1 hits



(CG10249):

Annotation Number : CG10249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027596
Gbrowse : chr2R:10788979-10799722 (-) // 100.0 //
Probeset : 1623036_a_at
Accessions : protein= NP_001097318; /// NP_001163155; /// NP_611005; /// NP_725426; /// NP_725427;, nucleotide= NM_001103848; /// NM_001169684; /// NM_137161; /// NM_166073; /// NM_166074;
FlyMine data for FBgn0027596.
BDGP gene expression has embryonic in situ data for BcDNA:GH03482: 27 pix of staining in 8 body parts.
Homophila reports that CG10249 is a close match (8e-11) to human gene ANK2;LQT4 (NP_066187), a gene associated with Cardiac arrhythmia, ankyrin-B-related, 600919 (3);Long QT syndrome-4, 600919 (3).
TRiP has 1 RNAi stocks for FBgn0027596 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027596 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain588 ± 74 of 4 2.70Up
Head334 ± 224 of 4 1.60Up
Eye282 ± 284 of 4 1.32None
Thoracicoabdominal ganglion496 ± 124 of 4 2.30Up
Salivary gland1018 ± 614 of 4 4.76Up
Crop755 ± 224 of 4 3.50Up
Midgut174 ± 24 of 4 0.80None
Tubule560 ± 384 of 4 2.60Up
Hindgut610 ± 224 of 4 2.90Up
Heart185 ± 164 of 4 0.87None
Fat body192 ± 264 of 4 0.90None
Ovary91 ± 54 of 4 0.40Down
Testis836 ± 134 of 4 3.90Up
Male accessory glands108 ± 134 of 4 0.50Down
Virgin spermatheca457 ± 74 of 4 2.14Up
Mated spermatheca520 ± 314 of 4 2.43Up
Adult carcass222 ± 124 of 4 1.00None
Larval CNS589 ± 884 of 4 2.75Up
Larval Salivary gland67 ± 94 of 4 0.31Down
Larval midgut218 ± 144 of 4 1.02None
Larval tubule108 ± 104 of 4 0.50Down
Larval hindgut372 ± 304 of 4 1.74Up
Larval fat body209 ± 494 of 4 1.00None
Larval trachea1696 ± 2894 of 4 7.92Up
Larval carcass510 ± 204 of 4 2.38Up
S2 cells (growing)154 ± 24 of 4 0.72Down
Whole fly214 ± 164 of 4

Looking for CG10249-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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